A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

R

R0CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

R1CE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

R1CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

R1r10CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R1r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

R1r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R1r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

R1r1CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R1r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

R1r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

R1r2CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r3CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R1r3CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r4CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R1r4CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r5CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r6CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r7CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r8CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R1r9CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2CE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

R2CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

R2r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R2r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R2r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

R2r1CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r1CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R2r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R2r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

R2r2CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r2CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r3CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R2r3CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

R2r3CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r3CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r4CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R2r4CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r4CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r5CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r5CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r6CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r6CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r7CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r7CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r8CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r8CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R2r9CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R2r9CE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

R3CE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

R3r10CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r11CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R3r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R3r1CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R3r2CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r3CE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

R3r3CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r4CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r5CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r6CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r7CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r8CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R3r9CE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

R4CE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

R4r1CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

R4r2CE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

REGULAR_COMPLETE - Static variable in interface org.primordion.xholon.base.IGrid

REGULAR_COMPLETE_SELF - Static variable in interface org.primordion.xholon.base.IGrid

REGULAR_CYCLE - Static variable in interface org.primordion.xholon.base.IGrid

REGULAR_WHEEL - Static variable in interface org.primordion.xholon.base.IGrid

RESOURCE_ACTIVITY - Static variable in class org.primordion.xholon.base.TreeNodeFactoryStatic

RESOURCE_STATEMACHINEENTITY - Static variable in class org.primordion.xholon.base.TreeNodeFactoryStatic

RESOURCE_XHOLON - Static variable in class org.primordion.xholon.base.TreeNodeFactoryStatic

RESOURCE_XHOLONCLASS - Static variable in class org.primordion.xholon.base.TreeNodeFactoryStatic

RESTING_POTENTIAL - Static variable in class org.primordion.cellontro.app.XhLife

RGBTypeDouble - class org.primordion.xholon.io.vrml.RGBTypeDouble.

VRML VrmlColor RGBTypeDouble.

RGBTypeDouble() - Constructor for class org.primordion.xholon.io.vrml.RGBTypeDouble

RGBTypeInt - class org.primordion.xholon.io.vrml.RGBTypeInt.

VRML VrmlColor RGBTypeInt.

RGBTypeInt() - Constructor for class org.primordion.xholon.io.vrml.RGBTypeInt

RGroupCE - Static variable in interface org.primordion.cellontro.app.CeLife

RRnaCE - Static variable in interface org.primordion.cellontro.app.CeLife

RaiseExceptionActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

Random - class org.primordion.xholon.util.Random.

Encapsulates the colt library's random number generation.

Random() - Constructor for class org.primordion.xholon.util.Random

RcsEnzymeCE - Static variable in interface org.primordion.cellontro.app.CeLife

RcsEnzymeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs1

RcsEnzymeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs2

RcsEnzymeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM

RcsEnzymeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM_Grid

RcsEnzymeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM

RcsEnzymeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM_NoSymbols

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouBilayer

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouInhibit

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyMillion

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyTenThou

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis

ReactionCE - Static variable in class org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML2

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis_Test

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly

ReactionCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel

ReadExtentActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadIsClassifiedObjectActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadLinkActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadLinkObjectEndActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadLinkObjectEndQualifierActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadSelfActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadStructuralFeatureActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReadVariableActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReclassifyObjectActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

RectumCE - Static variable in interface org.primordion.cellontro.app.CeLife

ReflectionFactory - class org.primordion.xholon.base.ReflectionFactory.

ReflectionFactory encapsulates a singleton instance of a class that implements IReflection.

ReflectionFactory() - Constructor for class org.primordion.xholon.base.ReflectionFactory

ReflectionJavaMicro - class org.primordion.xholon.base.ReflectionJavaMicro.

Reflection supports a metadata capability.

ReflectionJavaMicro() - Constructor for class org.primordion.xholon.base.ReflectionJavaMicro

ReflectionJavaStandard - class org.primordion.xholon.base.ReflectionJavaStandard.

Reflection supports a metadata capability.

ReflectionJavaStandard() - Constructor for class org.primordion.xholon.base.ReflectionJavaStandard

RegionCE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

RegionCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

RegionCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

RegionCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

RegionCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

RegionCE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

RegionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity

Regulation - Static variable in class org.primordion.cellontro.app.XhLife

Regulation - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcs1

Regulation - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcs2

Regulation - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

Regulation - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

Regulation - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

Regulation - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM

Regulation - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM_NoSymbols

RegulatoryComplexCE - Static variable in interface org.primordion.cellontro.app.CeLife

RemoveStructuralFeatureValueActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

RemoveVariableValueActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ReplyActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

ResultCE - Static variable in interface org.primordion.ealontro.app.CeTutorial4

RetinaCE - Static variable in interface org.primordion.cellontro.app.CeLife

RetinaConesAndRodsCE - Static variable in interface org.primordion.cellontro.app.CeLife

Rev_Sb1_Pr1_Ac0_In0_Co0 - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

Rev_Sb1_Pr1_Ac0_In0_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

Rev_Sb1_Pr2_Ac0_In0_Co0 - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

RgAlaCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgArgCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgAsnCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgAspCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgCysCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgGlnCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgGluCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgGlyCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgHisCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgIleCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgLeuCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgLysCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgMetCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgPheCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgProCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgSerCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgThrCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgTrpCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgTyrCE - Static variable in interface org.primordion.cellontro.app.CeLife

RgValCE - Static variable in interface org.primordion.cellontro.app.CeLife

RiboseCE - Static variable in interface org.primordion.cellontro.app.CeLife

RibosomeCE - Static variable in interface org.primordion.cellontro.app.CeLife

RightAtriumCE - Static variable in interface org.primordion.cellontro.app.CeLife

RightVentricleCE - Static variable in interface org.primordion.cellontro.app.CeLife

RingSubunitCE - Static variable in interface org.primordion.cellontro.app.CeLife

RnaNucleotideCE - Static variable in interface org.primordion.cellontro.app.CeLife

RnaPolymeraseCE - Static variable in interface org.primordion.cellontro.app.CeLife

RnaPolymeraseICE - Static variable in interface org.primordion.cellontro.app.CeLife

RnaPolymeraseIICE - Static variable in interface org.primordion.cellontro.app.CeLife

RnaPolymeraseIIICE - Static variable in interface org.primordion.cellontro.app.CeLife

RobotCE - Static variable in interface org.primordion.ctrnn.app.CeAdapSysLab

RockCE - Static variable in interface org.primordion.cellontro.app.CeLife

RodCE - Static variable in interface org.primordion.cellontro.app.CeLife

RodOuterSegmentCE - Static variable in interface org.primordion.cellontro.app.CeLife

Rotations - class org.primordion.xholon.io.vrml.Rotations.

VRML Rotations.

Rotations() - Constructor for class org.primordion.xholon.io.vrml.Rotations

Constructor.

RoughErCE - Static variable in interface org.primordion.cellontro.app.CeLife

RowCE - Static variable in interface org.primordion.ealontro.app.CeAntForaging

RowCE - Static variable in interface org.primordion.ealontro.app.CeAntTrail

RowCE - Static variable in interface org.primordion.user.app.CeBrenda

RowCE - Static variable in interface org.primordion.user.app.CeTurtleExample1

RowCE - Static variable in interface org.primordion.user.app.WolfSheepGrass.CeWolfSheepGrass

RowCE - Static variable in interface org.primordion.xholon.samples.Ce09SpatialGames

RowCE - Static variable in interface org.primordion.xholon.samples.Ce1dSimple

RowCE - Static variable in interface org.primordion.xholon.samples.CeGameOfLife

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel1

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel10

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel11

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel12

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel13

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel14

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel15

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16nl

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel2

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel3

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel4

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel5

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel5tg

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel6

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel7

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel8

RowCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel9

RowCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM_Grid

RuffinisCorpuscleCE - Static variable in interface org.primordion.cellontro.app.CeLife

RuffinisCorpuscleNeuronCE - Static variable in interface org.primordion.cellontro.app.CeLife

RuleCE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

RuleCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

RuleCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

RuleCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

RuleCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

RuleCE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

RuleSetCE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

r - Variable in class org.primordion.xholon.io.vrml.RGBTypeDouble

r - Variable in class org.primordion.xholon.io.vrml.RGBTypeInt

rCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

rate - Variable in class org.primordion.xholon.samples.XhCollisions

reaction1CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction2CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction3CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction4CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction5CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction6CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction7CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

reaction8CE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

readConfigFromFileXml(String) - Method in class org.primordion.xholon.app.Application

readConfigFromFileXml(String) - Method in interface org.primordion.xholon.app.IApplication

Read configuration values from an XML file.

readConfigFromFileXml(String, IApplication) - Static method in class org.primordion.xholon.base.Parameters

Read configuration values from an XML file.

reconfigure() - Method in class org.primordion.ealontro.ec.app.antforaging.XhEcjAntForaging

reconfigure() - Method in class org.primordion.xholon.base.AbstractGrid

reconfigure() - Method in interface org.primordion.xholon.base.IXholon

Reconfigure, such as at the start of a new GP generation.

reconfigure() - Method in class org.primordion.xholon.base.Xholon

refresh() - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

refresh(IXholon) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

refresh() - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Refresh the physical display to reflect changed information, such as the current coloring of the icons when states change in a state machine.

refresh(IXholon) - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Refresh the physical display for this sub tree only, to reflect changed information, such as the current coloring of the icons when states change in a state machine.

refresh() - Method in class org.primordion.xholon.io.XholonGui

Refresh the entire tree being displayed in the viewer.

remove() - Method in interface org.primordion.xholon.base.IXholon

Remove this node from the model, by recursively removing all children and next siblings, and by then returning it to the factory.

remove() - Method in class org.primordion.xholon.base.Xholon

remove() - Method in class org.primordion.xholon.io.AbstractChartViewer

remove() - Method in class org.primordion.xholon.io.AbstractHistogramViewer

remove() - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

remove() - Method in class org.primordion.xholon.io.ChartViewerGnuplot

remove() - Method in class org.primordion.xholon.io.ChartViewerJFreeChart

remove() - Method in class org.primordion.xholon.io.HistogramViewerGnuplot

remove() - Method in class org.primordion.xholon.io.HistogramViewerJFreeChart

remove() - Method in interface org.primordion.xholon.io.IChartViewer

Remove the chart from the screen.

remove() - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Remove the graph from the screen.

remove() - Method in interface org.primordion.xholon.io.IGraphicalTreeViewer

Remove the graph from the screen.

remove() - Method in interface org.primordion.xholon.io.IHistogramViewer

Remove the chart from the screen.

remove() - Method in class org.primordion.xholon.io.TreeViewerJung

removeChild() - Method in interface org.primordion.xholon.base.IXholon

Detach this node from its parent and from any siblings.

removeChild() - Method in class org.primordion.xholon.base.Xholon

replication - Variable in class org.primordion.xholon.base.Port

Replications of this port.

reset - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch

reset - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

resetNextId() - Static method in class org.primordion.xholon.base.Xholon

Set the next available id back to 0.

resetNextId() - Static method in class org.primordion.xholon.base.XholonClass

Set the next available id back to 0.

resetViewers() - Method in class org.primordion.xholon.app.Application

resetViewers() - Method in interface org.primordion.xholon.app.IApplication

Reset all viewers to their default values.

returnTreeNode(IXholon) - Method in interface org.primordion.xholon.base.ITreeNodeFactory

Return a TreeNode to the factory.

returnTreeNode(IXholon) - Method in class org.primordion.xholon.base.TreeNodeFactoryDynamic

returnTreeNode(IXholon) - Method in class org.primordion.xholon.base.TreeNodeFactoryStatic

reversible - Variable in class org.primordion.cellontro.base.BioXholonClass

right(double) - Method in interface org.primordion.xholon.base.ITurtle

Turn right a given angle.

right(double) - Method in class org.primordion.xholon.base.Turtle

roleName - Variable in class org.primordion.cellontro.app.XhAbstractSbml

roleName - Variable in class org.primordion.cellontro.app.XhCell

roleName - Variable in class org.primordion.cellontro.app.XhCellAutop

roleName - Variable in class org.primordion.cellontro.app.XhLife

roleName - Variable in class org.primordion.ctrnn.base.XhAbstractCtrnn

roleName - Variable in class org.primordion.dynsys.app.XhFibonacci

roleName - Variable in class org.primordion.dynsys.app.XhGravity1

roleName - Variable in class org.primordion.dynsys.app.XhInterest

roleName - Variable in class org.primordion.dynsys.app.XhTrain

roleName - Variable in class org.primordion.ealontro.app.XhAntForaging

roleName - Variable in class org.primordion.ealontro.app.XhAntTrail

roleName - Variable in class org.primordion.ealontro.app.XhCartCentering

roleName - Variable in class org.primordion.ealontro.app.XhEcjAntTrail

roleName - Variable in class org.primordion.ealontro.app.XhEcjTutorial4

roleName - Variable in class org.primordion.ealontro.app.XhTutorial4

roleName - Variable in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering

roleName - Variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

roleName - Variable in class org.primordion.memcomp.base.XhAbstractBraneCalc

roleName - Variable in class org.primordion.memcomp.base.XhAbstractMemComp

roleName - Variable in class org.primordion.user.app.Epo2.XhEpo2

roleName - Variable in class org.primordion.user.app.WolfSheepGrass.XhWolfSheepGrass

roleName - Variable in class org.primordion.user.app.XhBrenda

roleName - Variable in class org.primordion.user.app.XhTurtleExample1

roleName - Variable in class org.primordion.xholon.base.Attribute

roleName - Variable in class org.primordion.xholon.base.ContainmentData

roleName - Variable in class org.primordion.xholon.base.Control

Name of a Control object.

roleName - Variable in class org.primordion.xholon.base.StateMachineEntity

roleName - Variable in class org.primordion.xholon.samples.XhCollisions

roleName - Variable in class org.primordion.xholon.samples.XhCombo

roleName - Variable in class org.primordion.xholon.samples.XhHex

roleName - Variable in class org.primordion.xholon.samples.XhTestFsm

roleName - Variable in class org.primordion.xholon.samples.XhTestFsmKW

roleName - Variable in class org.primordion.xholon.samples.XhTestFsmOrthog

roleName - Variable in class org.primordion.xholon.samples.XhTestFsmOrthogKW

roleName - Variable in class org.primordion.xholon.samples.XhWatch

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel10

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel11

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel12

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel13

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel14

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel15

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel6

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel7

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel8

roleName - Variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel9

roleName - Variable in class org.primordion.xholon.tutorials.XhHelloWorld

roleName - Variable in class org.primordion.xholon.tutorials.XhHelloWorld_TestTime

roleName - Variable in class org.primordion.xholon.tutorials.XhHelloWorld_str

roleName - Variable in class org.primordion.xholon.tutorials.rcs.XhRcs1

roleName - Variable in class org.primordion.xholon.tutorials.rcs.XhRcs2

roleName - Variable in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

roleName - Variable in class org.primordion.xholon.xmiapps.XhElevator

roleName - Variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

roleName - Variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial

roleName - Variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_multiWorld

roleName - Variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_plus

roleName - Variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_universe

roleName - Variable in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest

roleName - Variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

roleName - Variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

roleName - Variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM

roleName - Variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM_NoSymbols

roleName - Variable in class org.primordion.xholon.xmiapps.XhStopWatch

roleName - Variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

roleName - Variable in class org.primordion.xholon.xmiapps.XhTestFsm

roleName - Variable in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

roleName - Variable in class org.primordion.xholon.xmiapps.XhTestFsmHistory

roleName - Variable in class org.primordion.xholon.xmiapps.XhTestFsmJunction

roleName - Variable in class org.primordion.xholon.xmiapps.XhTestFsmOrthogonal

roleName - Variable in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

roleName - Variable in class org.primordion.xholon.xmiappsTc.XhElevator

roleName - Variable in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial

roleName - Variable in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial_multiWorld

roleName - Variable in class org.primordion.xholon.xmiappsTc.XhStateMachineOnly

roleName - Variable in class org.primordion.xholon.xmiappsTc.XhTestFsm

roleName - Variable in class org.primordion.xholon.xmiappsTcSysML.XhHelloWorldTutorialSysML

rt(double) - Method in interface org.primordion.xholon.base.ITurtle

Turn right a given angle.

rt(double) - Method in class org.primordion.xholon.base.Turtle

run() - Method in class org.primordion.xholon.base.XholonTimerTask

run(IAction) - Method in class org.primordion.xholon.transform.model.popup.actions.GenerateXholonXmlJava