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D
DAmpCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeBrusselator
DCmpCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DEFAULT_LEVEL
- Static variable in class org.primordion.xholon.base.
Xholon
DEFAULT_SIZE_MSG_Q
- Static variable in interface org.primordion.xholon.base.
IXholon
DELTA_T
- Static variable in interface org.primordion.ctrnn.base.
ICtrnn
DGmpCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DHAPCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeYeastGly
DHAPCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeYeastGlyPritchardKel
DISPLAY_ALARM_STATUS
- Static variable in class org.primordion.xholon.samples.
XhWatch
DISPLAY_CHIME_STATUS
- Static variable in class org.primordion.xholon.samples.
XhWatch
DISPLAY_DATE
- Static variable in class org.primordion.xholon.samples.
XhWatch
DISPLAY_DAYOFWEEK
- Static variable in class org.primordion.xholon.samples.
XhWatch
DISPLAY_MODE
- Static variable in class org.primordion.xholon.samples.
XhWatch
DISPLAY_TIME
- Static variable in class org.primordion.xholon.samples.
XhWatch
DTmpCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DataPlotterCE
- Static variable in interface org.primordion.xholon.common.viewer.
CeDataPlotter
DataStoreNodeCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeUMLActivityEntity
DayOfWeekModeDisplayCE
- Static variable in interface org.primordion.xholon.xmiapps.
CeWatch
DecisionNodeCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeUMLActivityEntity
DeferrableTriggerCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeStateMachineEntity
DendriteBilayerCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DendriteCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DendriteMembraneCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DendritesCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DeoxyriboseCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DependentVariableCE
- Static variable in interface org.primordion.dynsys.app.
CeFibonacci
DestroyLinkActionCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeUMLActionEntity
DestroyObjectActionCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeUMLActionEntity
DiencephalonCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DigestedFoodCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DigestiveSystemCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeCellModel
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlyHunThouBilayer
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlyHunThouInhibit
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlyMillion
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlyTenThou
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlycolysis
DihydroxyacetonePhosphateCE
- Static variable in class org.primordion.cellontro.app.sbml.
CeGlycolysisTESTXML
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlycolysisTESTXML2
DihydroxyacetonePhosphateCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeGlycolysis_Test
DispatcherCE
- Static variable in interface org.primordion.xholon.xmiapps.
CeElevator
DispatcherCE
- Static variable in interface org.primordion.xholon.xmiappsTc.
CeElevator
DisplacedBugCE
- Static variable in interface org.primordion.xholon.tutorials.StupidModel.
CeStupidModel5tg
DisplayCE
- Static variable in interface org.primordion.xholon.xmiapps.
CeWatch
Divide
- class org.primordion.ealontro.ec.app.cartcentering.
Divide
.
Divide()
- Constructor for class org.primordion.ealontro.ec.app.cartcentering.
Divide
DnaCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DnaNucleotideCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DnaTest1CE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DoActivityCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeStateMachineEntity
DoorCE
- Static variable in interface org.primordion.xholon.xmiapps.
CeElevator
DoorCE
- Static variable in interface org.primordion.xholon.xmiappsTc.
CeElevator
DoorControl3
- Static variable in class org.primordion.xholon.xmiapps.
XhElevator
DoorControl3
- Static variable in class org.primordion.xholon.xmiappsTc.
XhElevator
DoorControlButtonCE
- Static variable in interface org.primordion.xholon.xmiapps.
CeElevator
DoorControlButtonCE
- Static variable in interface org.primordion.xholon.xmiappsTc.
CeElevator
DoorHoistControl4
- Static variable in class org.primordion.xholon.xmiapps.
XhElevator
DoorHoistControl4
- Static variable in class org.primordion.xholon.xmiappsTc.
XhElevator
DorsalHornLeftCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DorsalHornRightCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DorsalRootGanglionCE
- Static variable in interface org.primordion.cellontro.app.
CeLife
DoubleData
- class org.primordion.ealontro.ec.app.cartcentering.
DoubleData
.
DoubleData()
- Constructor for class org.primordion.ealontro.ec.app.cartcentering.
DoubleData
DripCE
- Static variable in interface org.primordion.memcomp.app.
CeBraneCalc1
DropPheromone
- class org.primordion.ealontro.ec.app.antforaging.
DropPheromone
.
DropPheromone()
- Constructor for class org.primordion.ealontro.ec.app.antforaging.
DropPheromone
DurationObservationActionCE
- Static variable in interface org.primordion.xholon.common.mechanism.
CeUMLActionEntity
DwasCCE
- Static variable in interface org.primordion.xholon.samples.
Ce09SpatialGames
DwasDCE
- Static variable in interface org.primordion.xholon.samples.
Ce09SpatialGames
dCE
- Static variable in interface org.primordion.memcomp.app.
CeCoopPSys00ex0
dCE
- Static variable in interface org.primordion.memcomp.app.
CeCoopSys02ex343_1
dCE
- Static variable in interface org.primordion.memcomp.app.
CeCoopSys02ex343_2
dCE
- Static variable in interface org.primordion.memcomp.app.
CeFsm06ex1
dCE
- Static variable in interface org.primordion.memcomp.app.
CeSymAnti02ex41
dPCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeCircadianClock
dTCE
- Static variable in interface org.primordion.cellontro.app.sbml.
CeCircadianClock
debugM
- Static variable in class org.primordion.xholon.base.
Msg
decPheneVal(double)
- Method in class org.primordion.cellontro.app.
XhAbstractSbml
decPheneVal(double)
- Method in class org.primordion.cellontro.app.
XhCell
decPheneVal(double)
- Method in class org.primordion.cellontro.app.
XhCellAutop
decPheneVal(double)
- Method in class org.primordion.cellontro.app.
XhLife
decPheneVal(double)
- Method in interface org.primordion.cellontro.base.
IBioXholon
Decrement the phene value by incAmount.
decVal(double)
- Method in class org.primordion.ealontro.app.
XhAntTrail
decVal(double)
- Method in class org.primordion.ealontro.app.
XhCartCentering
decVal(double)
- Method in class org.primordion.ealontro.app.
XhEcjAntTrail
decVal(double)
- Method in class org.primordion.ealontro.app.
XhTutorial4
decVal(double)
- Method in class org.primordion.ealontro.ec.app.cartcentering.
XhEcjCartCentering
decVal(double)
- Method in class org.primordion.user.app.Epo2.
XhEpo2
decVal(double)
- Method in class org.primordion.user.app.
XhBrenda
decVal(double)
- Method in class org.primordion.xholon.base.
Attribute.Attribute_double
decVal(double)
- Method in class org.primordion.xholon.base.
Attribute.Attribute_float
decVal(int)
- Method in class org.primordion.xholon.base.
Attribute.Attribute_int
decVal(int)
- Method in class org.primordion.xholon.base.
Attribute.Attribute_long
decVal(int)
- Method in class org.primordion.xholon.base.
Attribute.Attribute_short
decVal(double)
- Method in interface org.primordion.xholon.base.
IXholon
Decrement an internal double value by a specified amount.
decVal(int)
- Method in interface org.primordion.xholon.base.
IXholon
Decrement an internal int value by a specified amount.
decVal(double)
- Method in class org.primordion.xholon.base.
Xholon
decVal(int)
- Method in class org.primordion.xholon.base.
Xholon
decVal(double)
- Method in class org.primordion.xholon.tutorials.rcs.
XhRcs1
decVal(double)
- Method in class org.primordion.xholon.tutorials.rcs.
XhRcsTemp
decVal(double)
- Method in class org.primordion.xholon.xmiapps.
XhRcs_GP_FSM
decVal(int)
- Method in class org.primordion.xholon.xmiapps.
XhRcs_GP_FSM_Grid
decVal(double)
- Method in class org.primordion.xholon.xmiapps.
Xh__XholonTemplate__
deleteContainmentHierarchy()
- Method in class org.primordion.xholon.base.
ContainmentHierarchy
deleteContainmentHierarchy()
- Method in interface org.primordion.xholon.base.
IContainmentHierarchy
Delete the containment hierarchy.
deleteObserver(IXholon)
- Method in interface org.primordion.xholon.base.
IObservable
Deletes an observer from the set of observers of this object.
deleteObserver(IXholon)
- Method in class org.primordion.xholon.base.
ObservableStateMachineEntity
deleteObserver(IXholon)
- Method in class org.primordion.xholon.base.
ObservableXholonWithPorts
deleteObservers()
- Method in interface org.primordion.xholon.base.
IObservable
Clears the observer list so that this object no longer has any observers.
deleteObservers()
- Method in class org.primordion.xholon.base.
ObservableStateMachineEntity
deleteObservers()
- Method in class org.primordion.xholon.base.
ObservableXholonWithPorts
depth()
- Method in interface org.primordion.xholon.base.
IXholon
Get the number of ancestors of this node, excluding this node itself.
depth()
- Method in class org.primordion.xholon.base.
Xholon
dequeue()
- Method in interface org.primordion.xholon.base.
IQueue
Take an object off the queue.
dequeue()
- Method in class org.primordion.xholon.base.
Queue
des_AVAILABLE
- Static variable in class org.primordion.xholon.xmiapps.
XhElevator
des_AVAILABLE
- Static variable in class org.primordion.xholon.xmiappsTc.
XhElevator
des_BEING_SERVICED
- Static variable in class org.primordion.xholon.xmiapps.
XhElevator
des_BEING_SERVICED
- Static variable in class org.primordion.xholon.xmiappsTc.
XhElevator
des_REQUESTED
- Static variable in class org.primordion.xholon.xmiapps.
XhElevator
des_REQUESTED
- Static variable in class org.primordion.xholon.xmiappsTc.
XhElevator
die()
- Method in interface org.primordion.xholon.base.
ITurtle
Remove yourself permanently from the gene pool.
die()
- Method in class org.primordion.xholon.base.
Turtle
diffuse(String, double)
- Method in class org.primordion.xholon.base.
PatchOwner
Asks each patch to share the current value of a specified variable with all of its neighbors.
diffuse4(String, double)
- Method in class org.primordion.xholon.base.
PatchOwner
Asks each patch to share the current value of a specified variable with all of its neighbors.
direction
- Static variable in class org.primordion.ealontro.app.
XhAntTrail
directionName
- Static variable in class org.primordion.ealontro.app.
XhAntTrail
displayMessage(TransformerException)
- Method in class org.primordion.xholon.io.
Xmi2Xholon.XhErrorListener
distance(IXholon)
- Method in interface org.primordion.xholon.base.
IPatch
Return the distance between self and the specified turtle or patch.
distance(IXholon)
- Method in interface org.primordion.xholon.base.
ITurtle
Return the distance between self and the specified turtle or patch.
distance(IXholon)
- Method in class org.primordion.xholon.base.
Patch
distance(IXholon)
- Method in class org.primordion.xholon.base.
Turtle
distancexy(double, double)
- Method in interface org.primordion.xholon.base.
IPatch
Return the distance between yourself and the specified x, y coordinates.
distancexy(double, double)
- Method in interface org.primordion.xholon.base.
ITurtle
Return the distance between yourself and the specified x, y coordinates.
distancexy(double, double)
- Method in class org.primordion.xholon.base.
Patch
distancexy(double, double)
- Method in class org.primordion.xholon.base.
Turtle
doStateMachine(Message)
- Method in interface org.primordion.xholon.base.
IStateMachineEntity
Execute an instance of a state machine.
doStateMachine(Message)
- Method in class org.primordion.xholon.base.
StateMachineEntity
downhill()
- Method in interface org.primordion.xholon.base.
ITurtle
"Return the turtle heading in the direction of the minimum value of the variable patch-variable, of the patches in a one-patch radius of the turtle."
downhill()
- Method in class org.primordion.xholon.base.
Turtle
downhill4()
- Method in interface org.primordion.xholon.base.
ITurtle
"Return the turtle heading in the direction of the minimum value of the variable patch-variable, of the patches in a one-patch radius of the turtle."
downhill4()
- Method in class org.primordion.xholon.base.
Turtle
draw()
- Method in interface org.primordion.xholon.base.
IXholon
Draw a 2D representation of the tree, using inorder traversal.
draw()
- Method in class org.primordion.xholon.base.
Xholon
drip(IXholon, IXholon)
- Method in class org.primordion.memcomp.base.
XhAbstractBraneCalc
Drip - Split off zero inner membranes.
dropSize
- Variable in class org.primordion.ealontro.app.
XhAntForaging
dx()
- Method in interface org.primordion.xholon.base.
ITurtle
Returns the delta in the x direction if the turtle moved one unit along its current heading.
dx()
- Method in class org.primordion.xholon.base.
Turtle
dy()
- Method in interface org.primordion.xholon.base.
ITurtle
Returns the delta in the y direction if the turtle moved one unit along its current heading.
dy()
- Method in class org.primordion.xholon.base.
Turtle
Overview
Package
Class
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Tree
Deprecated
Index
Help
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All Classes
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