A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

D

DAmpCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DCE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator
 
DCmpCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DEFAULT_LEVEL - Static variable in class org.primordion.xholon.base.Xholon
 
DEFAULT_SIZE_MSG_Q - Static variable in interface org.primordion.xholon.base.IXholon
 
DELTA_T - Static variable in interface org.primordion.ctrnn.base.ICtrnn
 
DGmpCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DHAPCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly
 
DHAPCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel
 
DISPLAY_ALARM_STATUS - Static variable in class org.primordion.xholon.samples.XhWatch
 
DISPLAY_CHIME_STATUS - Static variable in class org.primordion.xholon.samples.XhWatch
 
DISPLAY_DATE - Static variable in class org.primordion.xholon.samples.XhWatch
 
DISPLAY_DAYOFWEEK - Static variable in class org.primordion.xholon.samples.XhWatch
 
DISPLAY_MODE - Static variable in class org.primordion.xholon.samples.XhWatch
 
DISPLAY_TIME - Static variable in class org.primordion.xholon.samples.XhWatch
 
DTmpCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DataPlotterCE - Static variable in interface org.primordion.xholon.common.viewer.CeDataPlotter
 
DataStoreNodeCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActivityEntity
 
DayOfWeekModeDisplayCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch
 
DecisionNodeCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActivityEntity
 
DeferrableTriggerCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity
 
DendriteBilayerCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DendriteCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DendriteMembraneCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DendritesCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DeoxyriboseCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DependentVariableCE - Static variable in interface org.primordion.dynsys.app.CeFibonacci
 
DestroyLinkActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity
 
DestroyObjectActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity
 
DiencephalonCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DigestedFoodCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DigestiveSystemCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouBilayer
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouInhibit
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyMillion
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyTenThou
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis
 
DihydroxyacetonePhosphateCE - Static variable in class org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML2
 
DihydroxyacetonePhosphateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis_Test
 
DispatcherCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator
 
DispatcherCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator
 
DisplacedBugCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel5tg
 
DisplayCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch
 
Divide - class org.primordion.ealontro.ec.app.cartcentering.Divide.
 
Divide() - Constructor for class org.primordion.ealontro.ec.app.cartcentering.Divide
 
DnaCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DnaNucleotideCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DnaTest1CE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DoActivityCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity
 
DoorCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator
 
DoorCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator
 
DoorControl3 - Static variable in class org.primordion.xholon.xmiapps.XhElevator
 
DoorControl3 - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator
 
DoorControlButtonCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator
 
DoorControlButtonCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator
 
DoorHoistControl4 - Static variable in class org.primordion.xholon.xmiapps.XhElevator
 
DoorHoistControl4 - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator
 
DorsalHornLeftCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DorsalHornRightCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DorsalRootGanglionCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
DoubleData - class org.primordion.ealontro.ec.app.cartcentering.DoubleData.
 
DoubleData() - Constructor for class org.primordion.ealontro.ec.app.cartcentering.DoubleData
 
DripCE - Static variable in interface org.primordion.memcomp.app.CeBraneCalc1
 
DropPheromone - class org.primordion.ealontro.ec.app.antforaging.DropPheromone.
 
DropPheromone() - Constructor for class org.primordion.ealontro.ec.app.antforaging.DropPheromone
 
DurationObservationActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity
 
DwasCCE - Static variable in interface org.primordion.xholon.samples.Ce09SpatialGames
 
DwasDCE - Static variable in interface org.primordion.xholon.samples.Ce09SpatialGames
 
dCE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0
 
dCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1
 
dCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2
 
dCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1
 
dCE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41
 
dPCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock
 
dTCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock
 
debugM - Static variable in class org.primordion.xholon.base.Msg
 
decPheneVal(double) - Method in class org.primordion.cellontro.app.XhAbstractSbml
 
decPheneVal(double) - Method in class org.primordion.cellontro.app.XhCell
 
decPheneVal(double) - Method in class org.primordion.cellontro.app.XhCellAutop
 
decPheneVal(double) - Method in class org.primordion.cellontro.app.XhLife
 
decPheneVal(double) - Method in interface org.primordion.cellontro.base.IBioXholon
Decrement the phene value by incAmount.
decVal(double) - Method in class org.primordion.ealontro.app.XhAntTrail
 
decVal(double) - Method in class org.primordion.ealontro.app.XhCartCentering
 
decVal(double) - Method in class org.primordion.ealontro.app.XhEcjAntTrail
 
decVal(double) - Method in class org.primordion.ealontro.app.XhTutorial4
 
decVal(double) - Method in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering
 
decVal(double) - Method in class org.primordion.user.app.Epo2.XhEpo2
 
decVal(double) - Method in class org.primordion.user.app.XhBrenda
 
decVal(double) - Method in class org.primordion.xholon.base.Attribute.Attribute_double
 
decVal(double) - Method in class org.primordion.xholon.base.Attribute.Attribute_float
 
decVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_int
 
decVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_long
 
decVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_short
 
decVal(double) - Method in interface org.primordion.xholon.base.IXholon
Decrement an internal double value by a specified amount.
decVal(int) - Method in interface org.primordion.xholon.base.IXholon
Decrement an internal int value by a specified amount.
decVal(double) - Method in class org.primordion.xholon.base.Xholon
 
decVal(int) - Method in class org.primordion.xholon.base.Xholon
 
decVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcs1
 
decVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcsTemp
 
decVal(double) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM
 
decVal(int) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid
 
decVal(double) - Method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__
 
deleteContainmentHierarchy() - Method in class org.primordion.xholon.base.ContainmentHierarchy
 
deleteContainmentHierarchy() - Method in interface org.primordion.xholon.base.IContainmentHierarchy
Delete the containment hierarchy.
deleteObserver(IXholon) - Method in interface org.primordion.xholon.base.IObservable
Deletes an observer from the set of observers of this object.
deleteObserver(IXholon) - Method in class org.primordion.xholon.base.ObservableStateMachineEntity
 
deleteObserver(IXholon) - Method in class org.primordion.xholon.base.ObservableXholonWithPorts
 
deleteObservers() - Method in interface org.primordion.xholon.base.IObservable
Clears the observer list so that this object no longer has any observers.
deleteObservers() - Method in class org.primordion.xholon.base.ObservableStateMachineEntity
 
deleteObservers() - Method in class org.primordion.xholon.base.ObservableXholonWithPorts
 
depth() - Method in interface org.primordion.xholon.base.IXholon
Get the number of ancestors of this node, excluding this node itself.
depth() - Method in class org.primordion.xholon.base.Xholon
 
dequeue() - Method in interface org.primordion.xholon.base.IQueue
Take an object off the queue.
dequeue() - Method in class org.primordion.xholon.base.Queue
 
des_AVAILABLE - Static variable in class org.primordion.xholon.xmiapps.XhElevator
 
des_AVAILABLE - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator
 
des_BEING_SERVICED - Static variable in class org.primordion.xholon.xmiapps.XhElevator
 
des_BEING_SERVICED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator
 
des_REQUESTED - Static variable in class org.primordion.xholon.xmiapps.XhElevator
 
des_REQUESTED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator
 
die() - Method in interface org.primordion.xholon.base.ITurtle
Remove yourself permanently from the gene pool.
die() - Method in class org.primordion.xholon.base.Turtle
 
diffuse(String, double) - Method in class org.primordion.xholon.base.PatchOwner
Asks each patch to share the current value of a specified variable with all of its neighbors.
diffuse4(String, double) - Method in class org.primordion.xholon.base.PatchOwner
Asks each patch to share the current value of a specified variable with all of its neighbors.
direction - Static variable in class org.primordion.ealontro.app.XhAntTrail
 
directionName - Static variable in class org.primordion.ealontro.app.XhAntTrail
 
displayMessage(TransformerException) - Method in class org.primordion.xholon.io.Xmi2Xholon.XhErrorListener
 
distance(IXholon) - Method in interface org.primordion.xholon.base.IPatch
Return the distance between self and the specified turtle or patch.
distance(IXholon) - Method in interface org.primordion.xholon.base.ITurtle
Return the distance between self and the specified turtle or patch.
distance(IXholon) - Method in class org.primordion.xholon.base.Patch
 
distance(IXholon) - Method in class org.primordion.xholon.base.Turtle
 
distancexy(double, double) - Method in interface org.primordion.xholon.base.IPatch
Return the distance between yourself and the specified x, y coordinates.
distancexy(double, double) - Method in interface org.primordion.xholon.base.ITurtle
Return the distance between yourself and the specified x, y coordinates.
distancexy(double, double) - Method in class org.primordion.xholon.base.Patch
 
distancexy(double, double) - Method in class org.primordion.xholon.base.Turtle
 
doStateMachine(Message) - Method in interface org.primordion.xholon.base.IStateMachineEntity
Execute an instance of a state machine.
doStateMachine(Message) - Method in class org.primordion.xholon.base.StateMachineEntity
 
downhill() - Method in interface org.primordion.xholon.base.ITurtle
"Return the turtle heading in the direction of the minimum value of the variable patch-variable, of the patches in a one-patch radius of the turtle."
downhill() - Method in class org.primordion.xholon.base.Turtle
 
downhill4() - Method in interface org.primordion.xholon.base.ITurtle
"Return the turtle heading in the direction of the minimum value of the variable patch-variable, of the patches in a one-patch radius of the turtle."
downhill4() - Method in class org.primordion.xholon.base.Turtle
 
draw() - Method in interface org.primordion.xholon.base.IXholon
Draw a 2D representation of the tree, using inorder traversal.
draw() - Method in class org.primordion.xholon.base.Xholon
 
drip(IXholon, IXholon) - Method in class org.primordion.memcomp.base.XhAbstractBraneCalc
Drip - Split off zero inner membranes.
dropSize - Variable in class org.primordion.ealontro.app.XhAntForaging
 
dx() - Method in interface org.primordion.xholon.base.ITurtle
Returns the delta in the x direction if the turtle moved one unit along its current heading.
dx() - Method in class org.primordion.xholon.base.Turtle
 
dy() - Method in interface org.primordion.xholon.base.ITurtle
Returns the delta in the y direction if the turtle moved one unit along its current heading.
dy() - Method in class org.primordion.xholon.base.Turtle
 

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _