A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

S

S1 - Static variable in class org.primordion.xholon.samples.XhWatch

S1 - Static variable in class org.primordion.xholon.xmiapps.XhWatch

S2 - Static variable in class org.primordion.xholon.samples.XhWatch

S2 - Static variable in class org.primordion.xholon.xmiapps.XhWatch

S3 - Static variable in class org.primordion.xholon.samples.XhWatch

S3 - Static variable in class org.primordion.xholon.xmiapps.XhWatch

S3FOR2SECONDS - Static variable in class org.primordion.xholon.samples.XhWatch

S3FOR2SECONDS - Static variable in class org.primordion.xholon.xmiapps.XhWatch

S4 - Static variable in class org.primordion.xholon.samples.XhWatch

S4 - Static variable in class org.primordion.xholon.xmiapps.XhWatch

SCE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

SD_IN - Static variable in interface org.primordion.memcomp.base.IMembraneComputing

SD_OUT - Static variable in interface org.primordion.memcomp.base.IMembraneComputing

SFRotation - class org.primordion.xholon.io.vrml.SFRotation.

VRML SFRotation.

SFRotation() - Constructor for class org.primordion.xholon.io.vrml.SFRotation

Constructor.

SFVec3f - class org.primordion.xholon.io.vrml.SFVec3f.

VRML SFVec3f.

SFVec3f() - Constructor for class org.primordion.xholon.io.vrml.SFVec3f

Constructor.

SHOW_DATE - Static variable in class org.primordion.xholon.samples.XhWatch

SHOW_DATE - Static variable in class org.primordion.xholon.xmiapps.XhWatch

SHOW_TIME - Static variable in class org.primordion.xholon.samples.XhWatch

SHOW_TIME - Static variable in class org.primordion.xholon.xmiapps.XhWatch

SIG1 - Static variable in class org.primordion.xholon.samples.XhTestFsm

SIG1 - Static variable in class org.primordion.xholon.samples.XhTestFsmKW

SIG1 - Static variable in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest

SIG1 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsm

SIG1 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

SIG1 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmHistory

SIG1 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmJunction

SIG1 - Static variable in class org.primordion.xholon.xmiappsTc.XhTestFsm

SIG2 - Static variable in class org.primordion.xholon.samples.XhTestFsm

SIG2 - Static variable in class org.primordion.xholon.samples.XhTestFsmKW

SIG2 - Static variable in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest

SIG2 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsm

SIG2 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

SIG2 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmHistory

SIG2 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmJunction

SIG2 - Static variable in class org.primordion.xholon.xmiappsTc.XhTestFsm

SIG3 - Static variable in class org.primordion.xholon.samples.XhTestFsm

SIG3 - Static variable in class org.primordion.xholon.samples.XhTestFsmKW

SIG3 - Static variable in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest

SIG3 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsm

SIG3 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

SIG3 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmHistory

SIG3 - Static variable in class org.primordion.xholon.xmiapps.XhTestFsmJunction

SIG3 - Static variable in class org.primordion.xholon.xmiappsTc.XhTestFsm

SIGNAL_ANY - Static variable in interface org.primordion.xholon.base.ISignal

If a trigger has this value, then any signal will fire that transition (subject to guards).

SIGNAL_ANY - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIGNAL_ANY - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIGNAL_DOACTIVITY - Static variable in interface org.primordion.xholon.base.ISignal

A signal sent in a message to request that a UML do activity be executed in a state machine.

SIGNAL_DUMMY - Static variable in interface org.primordion.xholon.base.ISignal

A meaningless signal that can be sent for testing/debugging purposes.

SIGNAL_ID_NOT_FOUND - Static variable in interface org.primordion.xholon.base.IPortInterface

SIGNAL_INIT_FSM - Static variable in interface org.primordion.xholon.base.ISignal

An internal signal used by StateMachineEntity.initializeStateMachine().

SIGNAL_NAME_NOT_FOUND - Static variable in interface org.primordion.xholon.base.IPortInterface

SIGNAL_ONE - Static variable in class org.primordion.xholon.tutorials.XhHelloWorld

SIGNAL_ONE - Static variable in class org.primordion.xholon.tutorials.XhHelloWorld_NoXml

SIGNAL_ONE - Static variable in class org.primordion.xholon.tutorials.XhHelloWorld_TestTime

SIGNAL_ONE - Static variable in class org.primordion.xholon.tutorials.XhHelloWorld_str

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_multiWorld

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_plus

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_universe

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiappsArgoUML.XhHelloWorldTutorial

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial_multiWorld

SIGNAL_ONE - Static variable in class org.primordion.xholon.xmiappsTcSysML.XhHelloWorldTutorialSysML

SIGNAL_TIMEOUT - Static variable in interface org.primordion.xholon.base.ISignal

Timeout signal sent in a message from a concrete instance of IXholonTime to a xholon instance.

SIGNAL_UPDATE - Static variable in interface org.primordion.xholon.base.ISignal

A signal sent by an IObservable to an observer.

SIG_APPEND - Static variable in interface org.primordion.memcomp.base.IMembraneComputing

SIG_DISSOLVE - Static variable in interface org.primordion.memcomp.base.IMembraneComputing

SIG_READ_AD - Static variable in interface org.primordion.ctrnn.base.ICtrnn

SIG_SAMPLE - Static variable in class org.primordion.user.app.Epo2.XhEpo2

SIG_SAMPLE - Static variable in class org.primordion.user.app.XhBrenda

SIG_SAMPLE - Static variable in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel12

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel13

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel14

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel15

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16

SIG_SCHEDULE_ME - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16nl

SIG_SELF - Static variable in class org.primordion.user.app.TurtleExample1

SIG_SELF - Static variable in class org.primordion.user.app.XhTurtleExample1

SIG_SET_MOTOR_POWER - Static variable in interface org.primordion.ctrnn.base.ICtrnn

SIN_B_DOOR_CLOSE - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_DOOR_CLOSE - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_B_DOOR_OBSTRUCTED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_DOOR_OBSTRUCTED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_B_DOOR_OPEN - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_DOOR_OPEN - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_B_DOWN_PUSHED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_DOWN_PUSHED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_B_FLOOR_PUSHED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_FLOOR_PUSHED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_B_UP_PUSHED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_B_UP_PUSHED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_DOOR_CLOSED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_DOOR_CLOSED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_DOOR_LOCKED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_DOOR_LOCKED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_DOOR_OPENED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_DOOR_OPENED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_E_N_IS_AT - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_E_N_IS_AT - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_IS_AT - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_IS_AT - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_IS_READY_DEST - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_IS_READY_DEST - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_IS_READY_NO_DEST - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_IS_READY_NO_DEST - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_M - Static variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

SIN_M - Static variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

SIN_N - Static variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

SIN_N - Static variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

SIN_READY - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_READY - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIN_REQUESTED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SIN_REQUESTED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SIZE_ARRAY_GENEVAL - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SIZE_MYAPP_PORTS - Static variable in interface org.primordion.ctrnn.base.ICtrnn

SIZE_MYAPP_PORTS - Static variable in interface org.primordion.memcomp.base.IMembraneComputing

SIZE_SMCOUNT - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SMCOUNT_ACTIVATOR - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SMCOUNT_COENZYME - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SMCOUNT_INHIBITOR - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SMCOUNT_PRODUCT - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SMCOUNT_SUBSTRATE - Static variable in interface org.primordion.cellontro.base.IBioXholonClass

SOUT_ACK - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_ACK - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_ACTION_POTENTIAL - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_BLOOD_PLASMA - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_B_DOWN_ACK - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_DOWN_ACK - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_B_DOWN_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_DOWN_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_B_FLOOR_ACK - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_FLOOR_ACK - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_B_FLOOR_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_FLOOR_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_B_UP_ACK - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_UP_ACK - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_B_UP_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_B_UP_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_CHEW - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_CLOSE_DOOR - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_CLOSE_DOOR - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_DIGEST - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_DO_EXOCYTOSIS - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_LOCK_DOOR - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_LOCK_DOOR - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_MOVE_E_M_TO_FL_N - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_MOVE_E_M_TO_FL_N - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_MOVE_TO_FL_N - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_MOVE_TO_FL_N - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_OPEN_DOOR - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_OPEN_DOOR - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_P - Static variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

SOUT_P - Static variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

SOUT_PHOTON - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_POST_SYNAPTIC_POTENTIAL - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_Q - Static variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

SOUT_Q - Static variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

SOUT_R - Static variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

SOUT_R - Static variable in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

SOUT_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_REQUEST_SATISFIED - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_TICK - Static variable in class org.primordion.cellontro.app.XhLife

SOUT_TICK - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_TICK - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

SOUT_UNLOCK_DOOR - Static variable in class org.primordion.xholon.xmiapps.XhElevator

SOUT_UNLOCK_DOOR - Static variable in class org.primordion.xholon.xmiappsTc.XhElevator

STOP_BEEPING - Static variable in class org.primordion.xholon.samples.XhWatch

STOP_BEEPING - Static variable in class org.primordion.xholon.xmiapps.XhWatch

STRING - Static variable in class org.primordion.xholon.base.XPathConstants

The XPath 1.0 string data type.

S_ACTIVATE - Static variable in class org.primordion.cellontro.app.XhLife

S_ACTIVATE - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

S_ACTIVATE - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

S_DEACTIVATE - Static variable in class org.primordion.cellontro.app.XhLife

S_DEACTIVATE - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

S_DEACTIVATE - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

S_DORULE - Static variable in class org.primordion.xholon.samples.Xh1dSimple

SamplePort - Static variable in class org.primordion.user.app.Epo2.XhEpo2

SamplePort - Static variable in class org.primordion.user.app.XhBrenda

SamplePort - Static variable in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

SavingsAccountBalanceCE - Static variable in interface org.primordion.dynsys.app.CeInterest

Sbml2Cellontro - class org.primordion.cellontro.io.sbml.Sbml2Cellontro.

Sbml2Cellontro transforms SBML files into Xholon/Cellontro model files.

Sbml2Cellontro() - Constructor for class org.primordion.cellontro.io.sbml.Sbml2Cellontro

Constructor.

Sbml2Cellontro(String) - Constructor for class org.primordion.cellontro.io.sbml.Sbml2Cellontro

Constructor.

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouBilayer

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouInhibit

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyMillion

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyTenThou

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis

SbmlCompartmentCE - Static variable in class org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML2

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis_Test

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly

SbmlCompartmentCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel

SchwannCellCE - Static variable in interface org.primordion.cellontro.app.CeLife

SecretoryVesicleBilayerCE - Static variable in interface org.primordion.cellontro.app.CeLife

SecretoryVesicleCE - Static variable in interface org.primordion.cellontro.app.CeLife

SecretoryVesicleFluidCE - Static variable in interface org.primordion.cellontro.app.CeLife

SecretoryVesicleMembraneCE - Static variable in interface org.primordion.cellontro.app.CeLife

SecretoryVesicleSpaceCE - Static variable in interface org.primordion.cellontro.app.CeLife

SendObjectActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

SendSignalActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

SensorCE - Static variable in interface org.primordion.cellontro.app.CeLife

SensorCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator

SensorCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator

SensorNeuronCE - Static variable in interface org.primordion.ctrnn.app.CeAdapSysLab

SensoryReceptorNeuronCE - Static variable in interface org.primordion.cellontro.app.CeLife

SequenceNodeCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

SerCE - Static variable in interface org.primordion.cellontro.app.CeLife

SheepCE - Static variable in interface org.primordion.user.app.CeTurtleExample1

SheepCE - Static variable in interface org.primordion.user.app.WolfSheepGrass.CeWolfSheepGrass

SimpleEcologyCE - Static variable in interface org.primordion.cellontro.app.CeLife

SingleCellCE - Static variable in interface org.primordion.cellontro.app.CeLife

SkeletalMuscleCellCE - Static variable in interface org.primordion.cellontro.app.CeLife

SmallIntestineCE - Static variable in interface org.primordion.cellontro.app.CeLife

SmallMoleculeCE - Static variable in interface org.primordion.cellontro.app.CeLife

SmallMoleculeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs1

SmallMoleculeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs2

SmallMoleculeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM

SmallMoleculeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM_Grid

SmallMoleculeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM

SmallMoleculeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM_NoSymbols

SmoothErCE - Static variable in interface org.primordion.cellontro.app.CeLife

Snapshot - class org.primordion.xholon.io.Snapshot.

Take a shapshot of an entire Xholon tree.

Snapshot() - Constructor for class org.primordion.xholon.io.Snapshot

Constructor.

SnapshotCE - Static variable in interface org.primordion.xholon.common.viewer.CeSnapshot

SnapshotXML - class org.primordion.xholon.io.SnapshotXML.

Take a shapshot of an entire Xholon tree.

SnapshotXML() - Constructor for class org.primordion.xholon.io.SnapshotXML

Constructor.

SnapshotYAML - class org.primordion.xholon.io.SnapshotYAML.

Take a shapshot of an entire Xholon tree.

SnapshotYAML() - Constructor for class org.primordion.xholon.io.SnapshotYAML

Constructor.

SoilCE - Static variable in interface org.primordion.cellontro.app.CeLife

SolarSystemCE - Static variable in interface org.primordion.cellontro.app.CeLife

SolutionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SolutionCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs2

SolutionCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM

SolutionCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM_NoSymbols

SolventCE - Static variable in interface org.primordion.cellontro.app.CeLife

Sp1CE - Static variable in interface org.primordion.cellontro.app.CeLife

SpatialGameCE - Static variable in interface org.primordion.xholon.samples.Ce09SpatialGames

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeBrusselator

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeDimericMWCstiff

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouBilayer

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyHunThouInhibit

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyMillion

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlyTenThou

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis

SpeciesCE - Static variable in class org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysisTESTXML2

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeGlycolysis_Test

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly

SpeciesCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel

SphingolipidCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalArteryCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordCervicalRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordCoccygealRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordLumbarRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordSacralRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalCordThoracicRegionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalInterNeuronCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpinalVeinCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpokeCE - Static variable in interface org.primordion.cellontro.app.CeLife

SpringCE - Static variable in interface org.primordion.dynsys.app.CeTrain

StartClassifierBehaviorActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

StateCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity

StateMachineCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity

StateMachineEntity - class org.primordion.xholon.base.StateMachineEntity.

A state machine entity is any XholonClass that has to do with state machines.

StateMachineEntity() - Constructor for class org.primordion.xholon.base.StateMachineEntity

Constructor.

StateMachineEntityCE - Static variable in interface org.primordion.xholon.common.mechanism.CeStateMachineEntity

StateMachineWithNoClassCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeStateMachineOnly

StateMachineXhym - class org.primordion.xholon.base.StateMachineXhym.

A State Machine Xhym interacts with an individual xholon StateMachineEntity, and with its XhymAgent.

StateMachineXhym() - Constructor for class org.primordion.xholon.base.StateMachineXhym

StateMachineXhymCE - Static variable in interface org.primordion.xholon.common.viewer.CeXhym

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel10

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel11

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel12

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel13

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel14

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel15

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16nl

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel8

StatisticsCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel9

SteroidCE - Static variable in interface org.primordion.cellontro.app.CeLife

SteroidHormoneCE - Static variable in interface org.primordion.cellontro.app.CeLife

StomachCE - Static variable in interface org.primordion.cellontro.app.CeLife

StopWatchCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch

StopWatchCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch_Xhym

StopWatchCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch

StopWatchSystemCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch

StopWatchSystemCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch_Xhym

StringTokenizer - class org.primordion.xholon.util.StringTokenizer.

This is a replacement for the Java StringTokenizer class, for use with MIDP.

StringTokenizer(String, String) - Constructor for class org.primordion.xholon.util.StringTokenizer

StringTokenizer(String) - Constructor for class org.primordion.xholon.util.StringTokenizer

StromaLamellaeCE - Static variable in interface org.primordion.cellontro.app.CeLife

StructuralFeatureActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

StructureCE - Static variable in interface org.primordion.ealontro.app.CeAntForaging

StructureCE - Static variable in interface org.primordion.ealontro.app.CeAntTrail

StructureCE - Static variable in interface org.primordion.ealontro.app.CeCartCentering

StructureCE - Static variable in interface org.primordion.ealontro.app.CeTutorial4

StructuredActivityNodeCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity

StructuredClassifierCE - Static variable in interface org.primordion.cellontro.app.CeLife

StructuredClassifierCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator

StructuredClassifierCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch

StructuredClassifierCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel1

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel10

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel11

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel12

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel13

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel14

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel15

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel16nl

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel2

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel3

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel4

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel5

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel5tg

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel6

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel7

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel8

StupidModelCE - Static variable in interface org.primordion.xholon.tutorials.StupidModel.CeStupidModel9

Substrate - Static variable in class org.primordion.cellontro.app.XhLife

Substrate - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcs1

Substrate - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcs2

Substrate - Static variable in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

Substrate - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

Substrate - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

Substrate - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM

Substrate - Static variable in class org.primordion.xholon.xmiapps.XhRcs_GP_MM_NoSymbols

SubsystemCE - Static variable in interface org.primordion.memcomp.app.CeBraneCalc1

Subtract - class org.primordion.ealontro.ec.app.cartcentering.Subtract.

Subtract() - Constructor for class org.primordion.ealontro.ec.app.cartcentering.Subtract

SuccinateCE - Static variable in interface org.primordion.cellontro.app.CeLife

SuccinateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

SuccinateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly

SuccinateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel

SuccinateDehydrogenaseCE - Static variable in interface org.primordion.cellontro.app.CeLife

SuccinateDehydrogenaseCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

Succinate_BranchCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGly

Succinate_BranchCE - Static variable in interface org.primordion.cellontro.app.sbml.CeYeastGlyPritchardKel

SuccinylCoASynthetaseCE - Static variable in interface org.primordion.cellontro.app.CeLife

SuccinylCoASynthetaseCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

SuccinylCoaCE - Static variable in interface org.primordion.cellontro.app.CeLife

SuccinylCoaCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel

SucraseCE - Static variable in interface org.primordion.cellontro.app.CeLife

SucroseCE - Static variable in interface org.primordion.cellontro.app.CeLife

SucroseTransporterCE - Static variable in interface org.primordion.cellontro.app.CeLife

SunCE - Static variable in interface org.primordion.cellontro.app.CeLife

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeCoopPSys00ex0

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex32_1

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_1

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeCoopSys02ex343_2

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeFsm06ex1

SuperCellCE - Static variable in interface org.primordion.memcomp.app.CeSymAnti02ex41

SupplierCE - Static variable in interface org.primordion.user.app.Epo2.CeEpo2

SuspendedMassCE - Static variable in interface org.primordion.dynsys.app.CeGravity1

SvTypeEnzyme - Static variable in class org.primordion.cellontro.io.vrml.VrmlColorCell

SvTypeSmallMolecule - Static variable in class org.primordion.cellontro.io.vrml.VrmlColorCell

SvTypepHIndicator - Static variable in class org.primordion.cellontro.io.vrml.VrmlColorCell

SympatheticChainCE - Static variable in interface org.primordion.cellontro.app.CeLife

SympatheticChainGanglionCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapsesCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticCleftCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticCleftFluidCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticVesicleBilayerCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticVesicleCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticVesicleFluidCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticVesicleMembraneCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynapticVesicleSpaceCE - Static variable in interface org.primordion.cellontro.app.CeLife

SynaptotagminCE - Static variable in interface org.primordion.cellontro.app.CeLife

SystemCE - Static variable in interface org.primordion.memcomp.app.CeBraneCalc1

s - Variable in class org.primordion.xholon.io.vrml.HSVType

sPCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock

sTCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCircadianClock

saveSnapshot() - Method in class org.primordion.xholon.app.Application

Save snapshot of xholon tree.

saveSnapshot() - Method in interface org.primordion.xholon.app.IApplication

Save snapshot of the xholon tree.

saveSnapshot(IXholon, String) - Method in interface org.primordion.xholon.io.ISnapshot

Save a timestamped snapshot to an XML file.

saveSnapshot(IXholon, String) - Method in class org.primordion.xholon.io.SnapshotXML

saveSnapshot(IXholon, String) - Method in class org.primordion.xholon.io.SnapshotYAML

Save a timestamped snapshot to an XML file.

searchAlgorithm - Variable in class org.primordion.xholon.base.InheritanceHierarchy

searchForClosestNeighbors(int, int, String, String, int, boolean, IXholon) - Method in interface org.primordion.xholon.base.IXPath

Search for closest neighbors whose XholonClass names are xhcName.

searchForClosestNeighbors(int, int, String, String, int, boolean, IXholon) - Method in class org.primordion.xholon.base.XPath

Search for closest neighbors whose XholonClass names are xhcName.

securityException - Variable in class org.primordion.cellontro.app.XhAbstractSbml

securityException - Variable in class org.primordion.cellontro.app.XhCell

securityException - Variable in class org.primordion.cellontro.app.XhCellAutop

securityException - Variable in class org.primordion.cellontro.app.XhLife

seedRandomNumberGenerator() - Static method in class org.primordion.xholon.util.Misc

Seed the random number generator with the current data and time.

seedRandomNumberGenerator(long) - Static method in class org.primordion.xholon.util.Misc

Seed the random number generator with a known value.

selectionChanged(IAction, ISelection) - Method in class org.primordion.xholon.transform.model.popup.actions.GenerateXholonXmlJava

sendMessage(int, Object, IXholon, int) - Method in interface org.primordion.xholon.base.IPort

Send a ROOM/UML2 message through a local instance of a replicated port to a remote replicated port instance or directly to a remote xholon, or from a remote port replication to its owning xholon.

sendMessage(int, Object, IXholon) - Method in interface org.primordion.xholon.base.IXholon

Send a ROOM/UML2 message to a receiving Xholon instance.

sendMessage(int, Object, IXholon, int) - Method in interface org.primordion.xholon.base.IXholon

Send a ROOM/UML2 message to a receiving Xholon instance.

sendMessage(Message) - Method in interface org.primordion.xholon.base.IXholon

Send a ROOM/UML2 message to a receiving Xholon instance.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.Port

sendMessage(int, Object, IXholon, int) - Method in class org.primordion.xholon.base.Port

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.PortXhym

This is the Xholon equivalent of update(Observable o, Object arg) in Java.util.Observer, where: signal is ISignal.SIGNAL_UPDATE, and represents the update() function itself.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.Queue

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.StateMachineXhym

This is the Xholon equivalent of update(Observable o, Object arg) in Java.util.Observer, where: signal is ISignal.SIGNAL_UPDATE, and represents the update() function itself.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.Xholon

sendMessage(int, Object, IXholon, int) - Method in class org.primordion.xholon.base.Xholon

sendMessage(Message) - Method in class org.primordion.xholon.base.Xholon

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.XholonXhym

This is the Xholon equivalent of update(Observable o, Object arg) in Java.util.Observer, where: signal is ISignal.SIGNAL_UPDATE, and represents the update() function itself.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.base.XhymAgent

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel12

Put the sending bug into the queue to schedule it next time step.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel13

Put the sending bug into the queue to schedule it next time step.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel14

Put the sending bug into the queue to schedule it next time step.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel15

Put the sending bug into the queue to schedule it next time step.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel16

Put the sending bug into the queue to schedule it next time step.

sendMessage(int, Object, IXholon) - Method in class org.primordion.xholon.tutorials.StupidModel.QueueStupidModel16nl

Put the sending bug into the queue to schedule it next time step.

setABooleanFalse(boolean) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setABooleanFalse(boolean) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setABooleanTrue(boolean) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setABooleanTrue(boolean) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAByte(byte) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAByte(byte) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAChar(char) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAChar(char) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setADouble(double) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setADouble(double) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAFloat(float) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAFloat(float) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setALong(long[]) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setALong(long[]) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAShort(short) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAShort(short) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAString(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAString(String) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setActiveObjectType(int) - Method in class org.primordion.cellontro.base.BioXholonClass

setActiveObjectType(int) - Method in interface org.primordion.cellontro.base.IBioXholonClass

Set active object type.

setActivePart(IAction, IWorkbenchPart) - Method in class org.primordion.xholon.transform.model.popup.actions.GenerateXholonXmlJava

setAnInteger(Integer) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setAnInteger(int) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setAppM(boolean) - Method in class org.primordion.xholon.app.Application

setAppSpecificParam1(String) - Method in class org.primordion.user.app.AppBrenda

setAppSpecificParam1(String) - Method in class org.primordion.user.app.AppTurtleExample1

setAppSpecificParam1(String) - Method in class org.primordion.user.app.Epo2.AppEpo2

setAppSpecificParam1(String) - Static method in class org.primordion.user.app.Epo2.XhEpo2

setAppSpecificParam1(String) - Static method in class org.primordion.user.app.TurtleExample1

setAppSpecificParam1(String) - Static method in class org.primordion.user.app.XhBrenda

setAppSpecificParam1(String) - Static method in class org.primordion.user.app.XhTurtleExample1

setAppSpecificParam1(String) - Method in class org.primordion.xholon.xmiapps.App__XholonTemplate__

setAppSpecificParam1(String) - Static method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

setApplication(IApplication) - Static method in class org.primordion.xholon.app.Application

Set an instance of IApplication.

setArrivalFloor(int) - Method in class org.primordion.xholon.xmiapps.XhElevator

setArrivalFloor(int) - Method in class org.primordion.xholon.xmiappsTc.XhElevator

setAttributeArrayVal(IXholon, String, String, int, int) - Method in interface org.primordion.xholon.base.IReflection

Set the value of one slot in a named array attribute.

setAttributeArrayVal(IXholon, String, String, int, int) - Method in class org.primordion.xholon.base.ReflectionJavaMicro

setAttributeArrayVal(IXholon, String, String, int, int) - Method in class org.primordion.xholon.base.ReflectionJavaStandard

setAttributeBooleanVal(IXholon, String, boolean) - Method in interface org.primordion.xholon.base.IReflection

Set the value of a boolean attribute.

setAttributeBooleanVal(IXholon, String, boolean) - Method in class org.primordion.xholon.base.ReflectionJavaMicro

setAttributeBooleanVal(IXholon, String, boolean) - Method in class org.primordion.xholon.base.ReflectionJavaStandard

setAttributeVal(IXholon, String, String, int) - Method in interface org.primordion.xholon.base.IReflection

Set the value of a named attribute.

setAttributeVal(String, String) - Method in interface org.primordion.xholon.base.IXholon

Set the value of an attribute, given it's name.

setAttributeVal(IXholon, String, String, int) - Method in class org.primordion.xholon.base.ReflectionJavaMicro

setAttributeVal(IXholon, String, String, int) - Method in class org.primordion.xholon.base.ReflectionJavaStandard

setAttributeVal(String, String) - Method in class org.primordion.xholon.base.Xholon

setAttributeVal(String, String) - Method in class org.primordion.xholon.samples.XhCollisions

setBreed(int) - Method in interface org.primordion.xholon.base.ITurtle

Set or change the turtle's breed id.

setBreed(int) - Method in class org.primordion.xholon.base.Turtle

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel10

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel11

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel12

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel13

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel14

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel15

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16nl

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel2

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel3

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel4

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel5

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel5tg

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel6

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel7

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel8

Set the size of this bug.

setBugSize(double) - Method in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel9

Set the size of this bug.

setCaFuture() - Method in class org.primordion.xholon.base.AbstractGrid

setCaFuture() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Future Self link, if this is a 1D CA grid.

setCaLeft() - Method in class org.primordion.xholon.base.AbstractGrid

setCaLeft() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Left Neighbor link, if this is a 1D CA grid.

setCaRight() - Method in class org.primordion.xholon.base.AbstractGrid

setCaRight() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Right Neighbor link, if this is a 1D CA grid.

setCaRuleNumber(int) - Method in class org.primordion.xholon.samples.App1dSimple

setCaRuleNumber(int) - Static method in class org.primordion.xholon.samples.Xh1dSimple

Set the CA rule number.

setCanHandleNodeSelection(boolean) - Method in class org.primordion.xholon.io.XholonGui

Set canHandleNodeSelection to true or false.

setCellSize(int) - Method in class org.primordion.xholon.io.GridPanel

setCellSize(int) - Method in interface org.primordion.xholon.io.IGridPanel

Set the size of a grid cell.

setClassDetailsFile(String) - Method in class org.primordion.xholon.app.Application

setColor(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's color.

setColor(int) - Method in class org.primordion.xholon.base.Turtle

setCompositeStructureHierarchyFile(String) - Method in class org.primordion.xholon.app.Application

setConcreteClass(String) - Method in class org.primordion.cellontro.app.AppSbml

Set what the concrete XH class will be.

setControlTree(XholonClass) - Static method in class org.primordion.xholon.base.Control

Set the control tree, and return its root node.

setControllerState(int) - Method in class org.primordion.xholon.app.Application

setControllerState(int) - Method in interface org.primordion.xholon.app.IApplication

Set state of the controller for this app.

setCreateProtoFiles(boolean) - Static method in class org.primordion.xholon.io.vrml.AbstractVrmlWriter

setCshFilePath(String) - Static method in class org.primordion.ealontro.gp.XhKozaStatistics

Set the CompositeStructureHierarchy.xml file path, given the name of the model.

setCurrentDirection(int) - Method in class org.primordion.xholon.xmiapps.XhElevator

setCurrentDirection(int) - Method in class org.primordion.xholon.xmiappsTc.XhElevator

setCycleNoDest(int) - Method in class org.primordion.xholon.xmiapps.XhElevator

setCycleNoDest(int) - Method in class org.primordion.xholon.xmiappsTc.XhElevator

setData(Object) - Method in interface org.primordion.xholon.base.IMessage

Set the data to be sent with the message.

setData(Object) - Method in class org.primordion.xholon.base.Message

setDataPlotterParams(String) - Method in class org.primordion.xholon.app.Application

dataPlotterParams

setDestinationFloor(int) - Method in class org.primordion.xholon.xmiapps.XhElevator

setDestinationFloor(int) - Method in class org.primordion.xholon.xmiappsTc.XhElevator

setDistances(int, int) - Method in interface org.primordion.xholon.io.IGraphicalTreeViewer

Set the default x and y distances between vertices.

setDistances(int, int) - Method in class org.primordion.xholon.io.TreeViewerJung

setDoClassicStyle(boolean) - Static method in class org.primordion.xholon.io.vrml.AbstractVrmlWriter

setEast() - Method in class org.primordion.xholon.base.AbstractGrid

setEast() - Method in interface org.primordion.xholon.base.IGrid

Set reference to east link, if this is a grid.

setEcjArgs(String) - Method in class org.primordion.ealontro.app.AppEcj

setErrorM(boolean) - Method in class org.primordion.xholon.app.Application

setExecutable(File, boolean) - Static method in class org.primordion.xholon.util.Misc

Set the executable attribute of an existing file.

setExecutable(File, boolean, boolean) - Static method in class org.primordion.xholon.util.Misc

Set the executable attribute of an existing file.

setFactory(ITreeNodeFactory) - Static method in class org.primordion.xholon.base.Xholon

Specify the factory.

setFeatureType(int) - Method in class org.primordion.cellontro.base.BioXholonClass

setFeatureType(int[]) - Method in class org.primordion.cellontro.base.BioXholonClass

setFeatureType(int) - Method in interface org.primordion.cellontro.base.IBioXholonClass

Set feature type.

setFeatureType(int[]) - Method in interface org.primordion.cellontro.base.IBioXholonClass

Set the feature type of an enzyme, based on how many substrates, products, activators, inhibitors, and coenzymes (features) it interacts with.

setFirstChild(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Set first (leftmost) child of this node.

setFirstChild(IXholon) - Method in class org.primordion.xholon.base.Xholon

setFoodQuantity(int) - Method in class org.primordion.ealontro.app.XhAntForaging

Set food quantity.

setGraphSize(int, int) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

setGraphSize(int, int) - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Set the size of the graph.

setGraphSize(int, int) - Method in interface org.primordion.xholon.io.IGraphicalTreeViewer

Set the size of the graph.

setGraphSize(int, int) - Method in class org.primordion.xholon.io.TreeViewerJung

setGraphicalNetworkViewerClassName(String) - Method in class org.primordion.xholon.app.Application

graphicalNetworkViewerClassName

setGraphicalNetworkViewerParams(String) - Method in class org.primordion.xholon.app.Application

setGraphicalTreeViewerParams(String) - Method in class org.primordion.xholon.app.Application

setGrassRegrowthTime(int) - Method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setGrassRegrowthTime(int) - Static method in class org.primordion.user.app.WolfSheepGrass.Grass

setGridPanelClassName(String) - Method in class org.primordion.xholon.app.Application

setGridViewerParams(String) - Method in class org.primordion.xholon.app.Application

setGrowGrass(boolean) - Method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setGrowGrass(boolean) - Static method in class org.primordion.user.app.WolfSheepGrass.Grass

setHeading(double) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's heading.

setHeading(double) - Method in class org.primordion.xholon.base.Turtle

setHex0() - Method in class org.primordion.xholon.base.AbstractGrid

setHex0() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex0 (top) link, if this is a hexagonal grid.

setHex1() - Method in class org.primordion.xholon.base.AbstractGrid

setHex1() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex1 link, if this is a hexagonal grid.

setHex2() - Method in class org.primordion.xholon.base.AbstractGrid

setHex2() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex2 link, if this is a hexagonal grid.

setHex3() - Method in class org.primordion.xholon.base.AbstractGrid

setHex3() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex3 link, if this is a hexagonal grid.

setHex4() - Method in class org.primordion.xholon.base.AbstractGrid

setHex4() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex4 link, if this is a hexagonal grid.

setHex5() - Method in class org.primordion.xholon.base.AbstractGrid

setHex5() - Method in interface org.primordion.xholon.base.IGrid

Set reference to Hex5 link, if this is a hexagonal grid.

setHistogramPlotterParams(String) - Method in class org.primordion.xholon.app.Application

histogramPlotterParams

setIcon(Vertex, int) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung.XholonVertexStringer

setId(int) - Method in interface org.primordion.xholon.base.IXholon

Set the ID of this TreeNode instance.

setId(int) - Method in class org.primordion.xholon.base.Xholon

setImplName(String) - Method in interface org.primordion.xholon.base.IXholonClass

Set the name of the Java class that implements this Xholon class.

setImplName(String) - Method in class org.primordion.xholon.base.XholonClass

setIndex(int) - Method in interface org.primordion.xholon.base.IMessage

Set the index.

setIndex(int) - Method in class org.primordion.xholon.base.Message

setInfoLabel(String) - Method in class org.primordion.xholon.io.GridFrame

Sets some text that will be displayed in the frame.

setInfoM(boolean) - Method in class org.primordion.xholon.app.Application

setInformationFile(String) - Method in class org.primordion.xholon.app.Application

setInherHier(IInheritanceHierarchy) - Static method in class org.primordion.xholon.base.XholonClass

Set inheritance hierarchy.

setInheritanceHierarchy(IInheritanceHierarchy) - Method in class org.primordion.xholon.base.ContainmentHierarchy

setInheritanceHierarchy(IInheritanceHierarchy) - Method in interface org.primordion.xholon.base.IContainmentHierarchy

Set InheritanceHierarchy instance.

setInheritanceHierarchyFile(String) - Method in class org.primordion.xholon.app.Application

setInitialBugSizeMean(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel14

setInitialBugSizeMean(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setInitialBugSizeMean(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setInitialBugSizeMean(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setInitialBugSizeSD(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel14

setInitialBugSizeSD(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setInitialBugSizeSD(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setInitialBugSizeSD(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setInitialNumberSheep(int) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setInitialNumberSheep(int) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setInitialNumberWolves(int) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setInitialNumberWolves(int) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setInteractionParams(String) - Method in class org.primordion.xholon.app.Application

setInterface(int[]) - Method in interface org.primordion.xholon.base.IPortInterface

Set the provided or required interface of this port.

setInterface(int[]) - Method in class org.primordion.xholon.base.PortInterface

setInterfaceNames(String[]) - Method in interface org.primordion.xholon.base.IPortInterface

Set the names of the signals in the provided or required interface of this port.

setInterfaceNames(String[]) - Method in class org.primordion.xholon.base.PortInterface

setIsConjugated(boolean) - Method in interface org.primordion.xholon.base.IPort

Set whether or not this is a conjugated port.

setIsConjugated(boolean) - Method in class org.primordion.xholon.base.Port

setIsHidden(boolean) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's hide status.

setIsHidden(boolean) - Method in class org.primordion.xholon.base.Turtle

setJavaActivityClassName(String) - Method in class org.primordion.xholon.app.Application

setJavaClassName(String) - Method in class org.primordion.xholon.app.Application

setJavaXhClassClassName(String) - Method in class org.primordion.xholon.app.Application

setJavaXhClassName(String) - Method in class org.primordion.xholon.app.Application

setLabel(String) - Method in interface org.primordion.xholon.base.ITurtle

Set or change the turtle's label.

setLabel(String) - Method in class org.primordion.xholon.base.Turtle

setLabel(Edge, String) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung.XholonEdgeStringer

setLabel(Vertex, String) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung.XholonVertexStringer

setLabelFontSize(int) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

setLabelFontSize(int) - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Set the font size for displaying labels on vertices.

setLabelFontSize(int) - Method in interface org.primordion.xholon.io.IGraphicalTreeViewer

Set the font size for displaying labels on vertices.

setLabelFontSize(int) - Method in class org.primordion.xholon.io.TreeViewerJung

setLayout(int) - Static method in class org.primordion.xholon.samples.App09SpatialGames

setLayout(int) - Static method in class org.primordion.xholon.samples.Xh09SpatialGames

setLayoutType(int) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

setLayoutType(int) - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Select one of the layout types available with JUNG.

setLink(int, IXholon, String, int, int, int) - Method in interface org.primordion.xholon.base.IPort

Set the link from a local port replication to a remote port or xholon.

setLink(int, IXholon, String) - Method in interface org.primordion.xholon.base.IPort

Set the link from a local port replication to a remote port or xholon.

setLink(int, IXholon, String, int, int, int) - Method in class org.primordion.xholon.base.Port

setLink(int, IXholon, String) - Method in class org.primordion.xholon.base.Port

setM(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setM(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setMaxActivities(int) - Method in class org.primordion.xholon.app.Application

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel10

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel11

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel12

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel13

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel14

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel5

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel5tg

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel6

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel7

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel8

setMaxConsumptionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel9

setMaxFood(int) - Method in class org.primordion.ealontro.app.AppAntTrail

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel10

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel11

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel12

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel13

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel14

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel5

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel5tg

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel6

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel7

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel8

setMaxFoodProductionRate(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel9

setMaxMoves(int) - Method in class org.primordion.ealontro.app.AppAntTrail

setMaxPorts(int) - Method in class org.primordion.xholon.app.Application

maxPorts

setMaxPorts(int) - Static method in class org.primordion.xholon.base.StateMachineEntity

Set the maximum number of ports for any xholon in the model.

setMaxPorts(int) - Static method in class org.primordion.xholon.base.XholonWithPorts

Set the maximum number of ports for any xholon in the model.

setMaxProcessLoops(int) - Method in class org.primordion.xholon.app.Application

setMaxSize(int) - Method in interface org.primordion.xholon.base.IQueue

Set the maximum number of items that can be in the queue, and allocate space for that many items.

setMaxSize(int) - Method in class org.primordion.xholon.base.Queue

setMaxStateMachineEntities(int) - Method in class org.primordion.xholon.app.Application

setMaxXholonClasses(int) - Method in class org.primordion.xholon.app.Application

setMaxXholons(int) - Method in class org.primordion.xholon.app.Application

setModel(XholonClass, IXholon) - Static method in class org.primordion.xholon.base.Control

Set the model.

setModelName(String) - Method in class org.primordion.xholon.app.Application

modelName The modelName to set.

setMyInteger(Integer) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setMyInteger(int) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setN(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setN(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setName(String) - Method in interface org.primordion.xholon.base.IXholonClass

Set name of this XholonClass.

setName(String) - Method in class org.primordion.xholon.base.XholonClass

setNavInfo(String) - Method in interface org.primordion.xholon.base.IXholonClass

Set navigation information.

setNavInfo(String) - Method in class org.primordion.xholon.base.XholonClass

setNeighType(int) - Method in class org.primordion.xholon.io.GridPanel

setNeighType(int) - Method in interface org.primordion.xholon.io.IGridPanel

Set the neighborhood type, as defined in IGrid.

setNextSibling(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Set next (right) sibling of this node.

setNextSibling(IXholon) - Method in class org.primordion.xholon.base.Xholon

setNorth() - Method in class org.primordion.xholon.base.AbstractGrid

setNorth() - Method in interface org.primordion.xholon.base.IGrid

Set reference to north link, if this is a grid.

setNorthEast() - Method in class org.primordion.xholon.base.AbstractGrid

setNorthEast() - Method in interface org.primordion.xholon.base.IGrid

Set reference to north east link, if this is a grid.

setNorthWest() - Method in class org.primordion.xholon.base.AbstractGrid

setNorthWest() - Method in interface org.primordion.xholon.base.IGrid

Set reference to north west link, if this is a grid.

setNumLightsOn(int) - Method in class org.primordion.ctrnn.app.AppAdapSysLab

setNumLightsOn(int) - Static method in class org.primordion.ctrnn.app.XhAdapSysLab

Set the number of lights that are turned on, or random.

setNumModifiers(int) - Method in class org.primordion.cellontro.app.XhAbstractSbml

setNumModifiers(int) - Method in class org.primordion.cellontro.app.XhCell

setNumModifiers(int) - Method in class org.primordion.cellontro.app.XhCellAutop

setNumModifiers(int) - Method in class org.primordion.cellontro.app.XhLife

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhBrusselator

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhCellModel

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhCircadianClock

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhDimericMWCstiff

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouBilayer

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouInhibit

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyMillion

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyTenThou

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML2

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis_Test

setNumModifiers(int) - Method in class org.primordion.cellontro.app.sbml.XhYeastGlyPritchardKel

setNumModifiers(int) - Method in interface org.primordion.cellontro.base.IBioXholon

Set maximum number of modifiers (activator, inhibitor) that any xholon instance may have in this model.

setNumProducts(int) - Method in class org.primordion.cellontro.app.XhAbstractSbml

setNumProducts(int) - Method in class org.primordion.cellontro.app.XhCell

setNumProducts(int) - Method in class org.primordion.cellontro.app.XhCellAutop

setNumProducts(int) - Method in class org.primordion.cellontro.app.XhLife

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhBrusselator

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhCellModel

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhCircadianClock

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhDimericMWCstiff

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouBilayer

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouInhibit

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyMillion

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyTenThou

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML2

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis_Test

setNumProducts(int) - Method in class org.primordion.cellontro.app.sbml.XhYeastGlyPritchardKel

setNumProducts(int) - Method in interface org.primordion.cellontro.base.IBioXholon

Set maximum number of products that any xholon instance may have in this model.

setNumReactants(int) - Method in class org.primordion.cellontro.app.XhAbstractSbml

setNumReactants(int) - Method in class org.primordion.cellontro.app.XhCell

setNumReactants(int) - Method in class org.primordion.cellontro.app.XhCellAutop

setNumReactants(int) - Method in class org.primordion.cellontro.app.XhLife

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhBrusselator

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhCellModel

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhCircadianClock

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhDimericMWCstiff

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouBilayer

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyHunThouInhibit

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyMillion

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlyTenThou

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysisTESTXML2

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhGlycolysis_Test

setNumReactants(int) - Method in class org.primordion.cellontro.app.sbml.XhYeastGlyPritchardKel

setNumReactants(int) - Method in interface org.primordion.cellontro.base.IBioXholon

Set maximum number of reactants (substrates) that any xholon instance may have in this model.

setOutputFormat(int) - Method in interface org.primordion.xholon.base.IInteraction

Set the output format.

setOutputFormat(int) - Method in class org.primordion.xholon.base.Interaction

setPAYOFF_c(double) - Static method in class org.primordion.xholon.samples.Xh09SpatialGames

setParam(String, String) - Method in class org.primordion.ctrnn.app.AppAdapSysLab

setParam(String, String) - Method in class org.primordion.dynsys.app.AppTrain

setParam(String, String) - Method in class org.primordion.ealontro.app.AppAntForaging

setParam(String, String) - Method in class org.primordion.ealontro.app.AppAntTrail

setParam(String, String) - Method in class org.primordion.ealontro.app.AppEcj

setParam(String, String) - Method in class org.primordion.user.app.AppBrenda

setParam(String, String) - Method in class org.primordion.user.app.AppTurtleExample1

setParam(String, String) - Method in class org.primordion.user.app.Epo2.AppEpo2

setParam(String, String) - Method in class org.primordion.xholon.app.Application

setParam(String, String) - Method in interface org.primordion.xholon.app.IApplication

Set the value of a parameter.

setParam(String, String, Application) - Method in interface org.primordion.xholon.base.IReflection

Application uses this to set parameters.

setParam(String, String, Application) - Method in class org.primordion.xholon.base.ReflectionJavaMicro

setParam(String, String, Application) - Method in class org.primordion.xholon.base.ReflectionJavaStandard

setParam(String, String) - Method in class org.primordion.xholon.samples.App1dSimple

setParam(String, String) - Method in class org.primordion.xholon.samples.AppGeneric

setParam(String, String) - Method in class org.primordion.xholon.samples.AppTestFsm

setParam(String, String) - Method in class org.primordion.xholon.samples.AppTestFsmKW

setParam(String, String) - Method in class org.primordion.xholon.samples.AppTestFsmOrthog

setParam(String, String) - Method in class org.primordion.xholon.samples.AppTestFsmOrthogKW

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.AppTestFsm

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.AppTestFsmForkJoin

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.AppTestFsmHistory

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.AppTestFsmJunction

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.AppTestFsmOrthogonal

setParam(String, String) - Method in class org.primordion.xholon.xmiapps.App__XholonTemplate__

setParam(String, String) - Method in class org.primordion.xholon.xmiappsTc.AppTestFsm

setParentChildLinks(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Set parent child links.

setParentChildLinks(IXholon) - Method in class org.primordion.xholon.base.Xholon

setParentNode(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Set parent of this node.

setParentNode(IXholon) - Method in class org.primordion.xholon.base.Xholon

setParentSiblingLinks(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Set parent sibling links.

setParentSiblingLinks(IXholon) - Method in class org.primordion.xholon.base.Xholon

setPathName(String) - Static method in class org.primordion.xholon.io.Snapshot

setPayoffB(double) - Static method in class org.primordion.xholon.samples.App09SpatialGames

setPcolor(int) - Method in interface org.primordion.xholon.base.IPatch

Set the patch's pcolor.

setPcolor(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the patch's pcolor.

setPcolor(int) - Method in class org.primordion.xholon.base.Patch

setPcolor(int) - Method in class org.primordion.xholon.base.Turtle

setPenMode(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's pen mode.

setPenMode(int) - Method in class org.primordion.xholon.base.Turtle

setPheromoneDiffusionRate(double) - Method in class org.primordion.ealontro.app.AppAntForaging

setPheromoneDiffusionRate(double) - Static method in class org.primordion.ealontro.app.XhAntForaging

Set pheromone diffusion rate.

setPheromoneEvaporationRate(double) - Method in class org.primordion.ealontro.app.AppAntForaging

setPheromoneEvaporationRate(double) - Static method in class org.primordion.ealontro.app.XhAntForaging

Set pheromone evaporation rate.

setPlabel(String) - Method in interface org.primordion.xholon.base.IPatch

Set or change the patch's label.

setPlabel(String) - Method in interface org.primordion.xholon.base.ITurtle

Set or change the patch's label.

setPlabel(String) - Method in class org.primordion.xholon.base.Patch

setPlabel(String) - Method in class org.primordion.xholon.base.Turtle

setPlotType(int) - Method in class org.primordion.dynsys.app.AppTrain

setPlotType(int) - Static method in class org.primordion.dynsys.app.XhTrain

Set which type of data to plot on a chart.

setPorts() - Method in class org.primordion.xholon.base.GridEntity

setPorts() - Method in interface org.primordion.xholon.base.IXholon

Set ports, by creating an array of ports.

setPorts() - Method in class org.primordion.xholon.base.StateMachineEntity

setPorts() - Method in class org.primordion.xholon.base.Xholon

setPorts() - Method in class org.primordion.xholon.base.XholonWithPorts

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel10

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel11

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel12

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel13

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel14

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel15

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel7

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel8

Set processing complete.

setProcessingComplete(boolean) - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel9

Set processing complete.

setProvidedInterface(IPortInterface) - Method in interface org.primordion.xholon.base.IPort

Set the provided interface of this port.

setProvidedInterface(IPortInterface) - Method in class org.primordion.xholon.base.Port

setPxcor(int) - Method in interface org.primordion.xholon.base.IPatch

Set the patch's x coordinate.

setPxcor(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the patch's x coordinate.

setPxcor(int) - Method in class org.primordion.xholon.base.Patch

setPxcor(int) - Method in class org.primordion.xholon.base.Turtle

setPycor(int) - Method in interface org.primordion.xholon.base.IPatch

Set the patch's y coordinate.

setPycor(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the patch's y coordinate.

setPycor(int) - Method in class org.primordion.xholon.base.Patch

setPycor(int) - Method in class org.primordion.xholon.base.Turtle

setRandomNumberSeed(long) - Method in class org.primordion.xholon.app.Application

randomNumberSeed

setRawFitness(int) - Method in class org.primordion.ealontro.app.XhAntForaging

Set current fitness score for this GeneticProgram (typically used to reset to zero).

setReceiver(IXholon) - Method in interface org.primordion.xholon.base.IMessage

Set the intended receiver of the message.

setReceiver(IXholon) - Method in class org.primordion.xholon.base.Message

setReplications(int) - Method in interface org.primordion.xholon.base.IPort

Set the replication factor of a remote port, and create the remote port.

setReplications(int) - Method in class org.primordion.xholon.base.Port

setRequiredInterface(IPortInterface) - Method in interface org.primordion.xholon.base.IPort

Set the required interface of this port.

setRequiredInterface(IPortInterface) - Method in class org.primordion.xholon.base.Port

setRoleName(String) - Method in class org.primordion.cellontro.app.XhAbstractSbml

setRoleName(String) - Method in class org.primordion.cellontro.app.XhCell

setRoleName(String) - Method in class org.primordion.cellontro.app.XhCellAutop

setRoleName(String) - Method in class org.primordion.cellontro.app.XhLife

setRoleName(String) - Method in class org.primordion.ctrnn.base.XhAbstractCtrnn

setRoleName(String) - Method in class org.primordion.dynsys.app.XhFibonacci

setRoleName(String) - Method in class org.primordion.dynsys.app.XhGravity1

setRoleName(String) - Method in class org.primordion.dynsys.app.XhInterest

setRoleName(String) - Method in class org.primordion.dynsys.app.XhTrain

setRoleName(String) - Method in class org.primordion.ealontro.app.XhAntForaging

setRoleName(String) - Method in class org.primordion.ealontro.app.XhAntTrail

setRoleName(String) - Method in class org.primordion.ealontro.app.XhCartCentering

setRoleName(String) - Method in class org.primordion.ealontro.app.XhEcjAntTrail

setRoleName(String) - Method in class org.primordion.ealontro.app.XhEcjTutorial4

setRoleName(String) - Method in class org.primordion.ealontro.app.XhTutorial4

setRoleName(String) - Method in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering

setRoleName(String) - Method in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

setRoleName(String) - Method in class org.primordion.memcomp.base.XhAbstractBraneCalc

setRoleName(String) - Method in class org.primordion.memcomp.base.XhAbstractMemComp

setRoleName(String) - Method in class org.primordion.user.app.Epo2.XhEpo2

setRoleName(String) - Method in class org.primordion.user.app.WolfSheepGrass.XhWolfSheepGrass

setRoleName(String) - Method in class org.primordion.user.app.XhBrenda

setRoleName(String) - Method in class org.primordion.user.app.XhTurtleExample1

setRoleName(String) - Method in class org.primordion.xholon.base.Attribute

setRoleName(String) - Method in class org.primordion.xholon.base.Control

setRoleName(String) - Method in interface org.primordion.xholon.base.IXholon

Set name of the role played by this Xholon within a specific context.

setRoleName(String) - Method in class org.primordion.xholon.base.StateMachineEntity

setRoleName(String) - Method in class org.primordion.xholon.base.Xholon

setRoleName(String) - Method in class org.primordion.xholon.samples.XhCollisions

setRoleName(String) - Method in class org.primordion.xholon.samples.XhCombo

setRoleName(String) - Method in class org.primordion.xholon.samples.XhHex

setRoleName(String) - Method in class org.primordion.xholon.samples.XhTestFsm

setRoleName(String) - Method in class org.primordion.xholon.samples.XhTestFsmKW

setRoleName(String) - Method in class org.primordion.xholon.samples.XhTestFsmOrthog

setRoleName(String) - Method in class org.primordion.xholon.samples.XhTestFsmOrthogKW

setRoleName(String) - Method in class org.primordion.xholon.samples.XhWatch

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel10

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel11

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel12

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel13

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel14

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel15

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel6

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel7

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel8

setRoleName(String) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel9

setRoleName(String) - Method in class org.primordion.xholon.tutorials.rcs.XhRcs1

setRoleName(String) - Method in class org.primordion.xholon.tutorials.rcs.XhRcs2

setRoleName(String) - Method in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhElevator

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_multiWorld

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_plus

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_universe

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_MM

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_MM_NoSymbols

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhStopWatch

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.XhTestFsmOrthogonal

setRoleName(String) - Method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTc.XhElevator

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial_multiWorld

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTc.XhStateMachineOnly

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setRoleName(String) - Method in class org.primordion.xholon.xmiappsTcSysML.XhHelloWorldTutorialSysML

setRoot(IXholon) - Static method in class org.primordion.ealontro.gp.XhSimpleEvolutionState

Set the IXholon root node.

setRootPath(String) - Method in interface org.primordion.xholon.io.IXmi2Xholon

Set the root path.

setRootPath(String) - Method in class org.primordion.xholon.io.Xmi2Xholon

setRuntimeEnv(int) - Method in interface org.primordion.xholon.io.IXmi2Xholon

Set the runtime environment.

setRuntimeEnv(int) - Method in class org.primordion.xholon.io.Xmi2Xholon

setSaveSnapshots(boolean) - Method in class org.primordion.xholon.app.Application

setSeed(long) - Static method in class org.primordion.xholon.util.Random

Creates a new random number generator with the specified seed.

setSender(IXholon) - Method in interface org.primordion.xholon.base.IMessage

Set which Xholon instance sent the message.

setSender(IXholon) - Method in class org.primordion.xholon.base.Message

setSheepGainFromFood(double) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setSheepGainFromFood(double) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setSheepReproduce(double) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setSheepReproduce(double) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setShouldCompile(boolean) - Method in interface org.primordion.xholon.io.IXmi2Xholon

Set whether the generated code should be compiled.

setShouldCompile(boolean) - Method in class org.primordion.xholon.io.Xmi2Xholon

setShowContainers(boolean) - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung

setShowContainers(boolean) - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer

Select whether of not to include containers, and their edges, in the graph.

setShowStates(boolean) - Method in interface org.primordion.xholon.base.IInteraction

Set whether or not to show states on the sequence diagram.

setShowStates(boolean) - Method in class org.primordion.xholon.base.Interaction

setSiblingsComplete() - Method in class org.primordion.xholon.base.AbstractGrid

setSiblingsComplete() - Method in interface org.primordion.xholon.base.IGrid

Set references to all siblings, if this is a complete graph.

setSiblingsCompleteSelf() - Method in class org.primordion.xholon.base.AbstractGrid

setSiblingsCompleteSelf() - Method in interface org.primordion.xholon.base.IGrid

Set references to all siblings and to self, if this is a complete graph including self.

setSiblingsCycle() - Method in class org.primordion.xholon.base.AbstractGrid

setSiblingsCycle() - Method in interface org.primordion.xholon.base.IGrid

Set references to two adjacent siblings, if this is a cycle.

setSiblingsWheel() - Method in class org.primordion.xholon.base.AbstractGrid

setSiblingsWheel() - Method in interface org.primordion.xholon.base.IGrid

Set references to two adjacent siblings, and to parent, if this is a wheel.

setSignal(int) - Method in interface org.primordion.xholon.base.IMessage

Set the signal that identifies the message type.

setSignal(int) - Method in class org.primordion.xholon.base.Message

setSizeMessageQ(int) - Static method in class org.primordion.xholon.base.Xholon

Set the size of the message queue, and allocate a queue of that size.

setSizeMessageQueue(int) - Method in class org.primordion.xholon.app.Application

sizeMessageQueue Set the size of the message queue.

setSnapshotParams(String) - Method in class org.primordion.xholon.app.Application

setSnapshotTostring(boolean) - Static method in class org.primordion.xholon.io.Snapshot

setSocketHost(String) - Method in interface org.primordion.xholon.base.IInteraction

Set the host for a socket connection, if using sdedit as a sequence diagram server.

setSocketHost(String) - Method in class org.primordion.xholon.base.Interaction

setSocketPort(int) - Method in interface org.primordion.xholon.base.IInteraction

Set the port for a socket connection, if using sdedit as a sequence diagram server.

setSocketPort(int) - Method in class org.primordion.xholon.base.Interaction

setSouth() - Method in class org.primordion.xholon.base.AbstractGrid

setSouth() - Method in interface org.primordion.xholon.base.IGrid

Set reference to south link, if this is a grid.

setSouthEast() - Method in class org.primordion.xholon.base.AbstractGrid

setSouthEast() - Method in interface org.primordion.xholon.base.IGrid

Set reference to south east link, if this is a grid.

setSouthWest() - Method in class org.primordion.xholon.base.AbstractGrid

setSouthWest() - Method in interface org.primordion.xholon.base.IGrid

Set reference to south west link, if this is a grid.

setState(int) - Static method in class org.primordion.xholon.base.Control

Set the control state.

setState(int) - Method in class org.primordion.xholon.xmiapps.XhStopWatch

setState(int) - Method in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

setState(int) - Method in class org.primordion.xholon.xmiapps.XhTestFsm

setState(int) - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setStupidCellData(String) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setStupidCellData(String) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setStupidCellData(String) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel12

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel13

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel14

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel15

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16

setSurvivalProbability(double) - Method in class org.primordion.xholon.tutorials.StupidModel.AppStupidModel16nl

setTestNumber(int) - Method in class org.primordion.xholon.samples.AppGeneric

setTestNumber(int) - Static method in class org.primordion.xholon.samples.XhGeneric

Set which test will be run when user clicks on a node.

setTestScenario(int) - Method in class org.primordion.xholon.samples.AppTestFsm

setTestScenario(int) - Method in class org.primordion.xholon.samples.AppTestFsmKW

setTestScenario(int) - Method in class org.primordion.xholon.samples.AppTestFsmOrthog

setTestScenario(int) - Method in class org.primordion.xholon.samples.AppTestFsmOrthogKW

setTestScenario(int) - Static method in class org.primordion.xholon.samples.XhTestFsm

Set which test scenario to run.

setTestScenario(int) - Static method in class org.primordion.xholon.samples.XhTestFsmKW

Set which test scenario to run.

setTestScenario(int) - Static method in class org.primordion.xholon.samples.XhTestFsmOrthog

Set which test scenario to run.

setTestScenario(int) - Static method in class org.primordion.xholon.samples.XhTestFsmOrthogKW

Set which test scenario to run.

setTestScenario(int) - Method in class org.primordion.xholon.xmiapps.AppTestFsm

setTestScenario(int) - Method in class org.primordion.xholon.xmiapps.AppTestFsmForkJoin

setTestScenario(int) - Method in class org.primordion.xholon.xmiapps.AppTestFsmHistory

setTestScenario(int) - Method in class org.primordion.xholon.xmiapps.AppTestFsmJunction

setTestScenario(int) - Method in class org.primordion.xholon.xmiapps.AppTestFsmOrthogonal

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhElevator

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsm

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setTestScenario(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmOrthogonal

setTestScenario(int) - Method in class org.primordion.xholon.xmiappsTc.AppTestFsm

setTestScenario(int) - Static method in class org.primordion.xholon.xmiappsTc.XhElevator

setTestScenario(int) - Static method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setTimeStep(int) - Static method in class org.primordion.xholon.base.XholonTime

Set the current time step of the executing application.

setTimeStepInterval(int) - Method in class org.primordion.xholon.app.Application

setTimeStepInterval(int) - Static method in class org.primordion.xholon.base.XholonTime

Set time step interval defined for this application.

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.XhAbstractSbml

Set the time step multiplier, needed for numerical integration.

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.sbml.XhBrusselator

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.sbml.XhCircadianClock

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.sbml.XhDimericMWCstiff

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.sbml.XhGlycolysis_Test

setTimeStepMultiplier(int) - Static method in class org.primordion.cellontro.app.sbml.XhYeastGlyPritchardKel

setTrailFile(String) - Method in class org.primordion.ealontro.app.AppAntTrail

setTreeNodeFactory(ITreeNodeFactory) - Method in class org.primordion.xholon.base.ContainmentHierarchy

setTreeNodeFactory(ITreeNodeFactory) - Method in interface org.primordion.xholon.base.IContainmentHierarchy

Set singleton TreeNodeFactory instance.

setTreeNodeFactory(ITreeNodeFactory) - Method in interface org.primordion.xholon.base.IInheritanceHierarchy

Set singleton TreeNodeFactory.

setTreeNodeFactory(ITreeNodeFactory) - Method in class org.primordion.xholon.base.InheritanceHierarchy

setTreeNodeFactoryDynamic(boolean) - Method in class org.primordion.xholon.app.Application

treeNodeFactoryDynamic

setUid(String) - Method in interface org.primordion.xholon.base.IXholon

Set globally unique ID.

setUid(String) - Method in class org.primordion.xholon.base.StateMachineEntity

setUid(String) - Method in class org.primordion.xholon.base.Xholon

setUseDataPlotter(String) - Method in class org.primordion.xholon.app.Application

setUseGraphicalNetworkViewer(boolean) - Method in class org.primordion.xholon.app.Application

setUseGraphicalTreeViewer(boolean) - Method in class org.primordion.xholon.app.Application

setUseGridViewer(boolean) - Method in class org.primordion.xholon.app.Application

setUseHistogramPlotter(String) - Method in class org.primordion.xholon.app.Application

setUseInteractions(boolean) - Method in class org.primordion.xholon.app.Application

setUseLOD(boolean) - Static method in class org.primordion.xholon.io.vrml.AbstractVrmlWriter

setUsePheromone(boolean) - Method in class org.primordion.ealontro.app.AppAntForaging

setUsePheromone(boolean) - Static method in class org.primordion.ealontro.app.XhAntForaging

Set whether or not to use pheromone in the simulation.

setUsePheromoneDiffusion(boolean) - Method in class org.primordion.ealontro.app.AppAntForaging

setUsePheromoneDiffusion(boolean) - Static method in class org.primordion.ealontro.app.XhAntForaging

Set whether or not to use pheromone diffusion in the simulation.

setUseShapes(boolean) - Method in class org.primordion.xholon.io.GridPanel

setUseShapes(boolean) - Method in interface org.primordion.xholon.io.IGridPanel

Set whether or not to use shapes to draw objects.

setUseTextTree(boolean) - Method in class org.primordion.xholon.app.Application

setUseVrml(boolean) - Method in class org.primordion.xholon.app.Application

setVal(int) - Method in class org.primordion.dynsys.app.XhFibonacci

setVal(double) - Method in class org.primordion.dynsys.app.XhGravity1

setVal(double) - Method in class org.primordion.dynsys.app.XhInterest

setVal(double) - Method in class org.primordion.dynsys.app.XhTrain

setVal(int) - Method in class org.primordion.ealontro.app.XhAntTrail

setVal(double) - Method in class org.primordion.ealontro.app.XhCartCentering

setVal(double) - Method in class org.primordion.ealontro.app.XhEcjAntTrail

setVal(double) - Method in class org.primordion.ealontro.app.XhTutorial4

setVal(double) - Method in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering

setVal(double) - Method in class org.primordion.user.app.Epo2.XhEpo2

setVal(double) - Method in class org.primordion.user.app.XhBrenda

setVal(Object) - Method in class org.primordion.xholon.base.Attribute.Attribute_Object

setVal(String) - Method in class org.primordion.xholon.base.Attribute.Attribute_String

setVal(boolean) - Method in class org.primordion.xholon.base.Attribute.Attribute_boolean

setVal(byte) - Method in class org.primordion.xholon.base.Attribute.Attribute_byte

setVal(char) - Method in class org.primordion.xholon.base.Attribute.Attribute_char

setVal(double) - Method in class org.primordion.xholon.base.Attribute.Attribute_double

setVal(float) - Method in class org.primordion.xholon.base.Attribute.Attribute_float

setVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_int

setVal(long) - Method in class org.primordion.xholon.base.Attribute.Attribute_long

setVal(short) - Method in class org.primordion.xholon.base.Attribute.Attribute_short

setVal(double) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "double" maintained by this xholon instance.

setVal(boolean) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "boolean" maintained by this xholon instance.

setVal(byte) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "byte" maintained by this xholon instance.

setVal(char) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "char" maintained by this xholon instance.

setVal(float) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "float" maintained by this xholon instance.

setVal(int) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "int" maintained by this xholon instance.

setVal(long) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "long" maintained by this xholon instance.

setVal(short) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "short" maintained by this xholon instance.

setVal(String) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "String" maintained by this xholon instance.

setVal(Object) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a "Object" maintained by this xholon instance.

setVal(double) - Method in class org.primordion.xholon.base.Xholon

setVal(boolean) - Method in class org.primordion.xholon.base.Xholon

setVal(byte) - Method in class org.primordion.xholon.base.Xholon

setVal(char) - Method in class org.primordion.xholon.base.Xholon

setVal(float) - Method in class org.primordion.xholon.base.Xholon

setVal(int) - Method in class org.primordion.xholon.base.Xholon

setVal(long) - Method in class org.primordion.xholon.base.Xholon

setVal(Object) - Method in class org.primordion.xholon.base.Xholon

setVal(short) - Method in class org.primordion.xholon.base.Xholon

setVal(String) - Method in class org.primordion.xholon.base.Xholon

setVal(boolean) - Method in class org.primordion.xholon.samples.Xh1dSimple

setVal(int) - Method in class org.primordion.xholon.samples.XhCollisions

setVal(boolean) - Method in class org.primordion.xholon.samples.XhCombo

setVal(boolean) - Method in class org.primordion.xholon.samples.XhGameOfLife

setVal(boolean) - Method in class org.primordion.xholon.samples.XhHex

setVal(int) - Method in class org.primordion.xholon.samples.XhPingPong

setVal(long) - Method in class org.primordion.xholon.samples.XhPingPong

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel10

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel11

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel12

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel13

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel14

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel15

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel16

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel16nl

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel3

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel4

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel5

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel5tg

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel6

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel7

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel8

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel9

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel10

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel11

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel12

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel13

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel14

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel15

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel8

setVal(double) - Method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel9

setVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcs1

setVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

setVal(double) - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_plus

setVal(double) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM

setVal(int) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid

setVal(double) - Method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__

setVariableValue(String, int) - Method in interface org.primordion.xholon.base.IXholon

Set the value of a variable using reflection.

setVariableValue(String, int) - Method in class org.primordion.xholon.base.Xholon

setVrmlParams(String) - Method in class org.primordion.xholon.app.Application

setVrmlWriteDir(String) - Static method in class org.primordion.xholon.io.vrml.AbstractVrmlWriter

setVrmlWriterClassName(String) - Method in class org.primordion.xholon.app.Application

setWest() - Method in class org.primordion.xholon.base.AbstractGrid

setWest() - Method in interface org.primordion.xholon.base.IGrid

Set reference to west link, if this is a grid.

setWho(int) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's who id.

setWho(int) - Method in class org.primordion.xholon.base.Turtle

setWolfGainFromFood(double) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setWolfGainFromFood(double) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setWolfReproduce(double) - Static method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass

setWolfReproduce(double) - Static method in class org.primordion.user.app.WolfSheepGrass.WolfSheep

setX(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsm

setX(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setX(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setX(int) - Static method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setXRange(double, double) - Method in class org.primordion.xholon.io.AbstractChartViewer

setXRange(double, double) - Method in class org.primordion.xholon.io.AbstractHistogramViewer

setXRange(double, double) - Method in interface org.primordion.xholon.io.IChartViewer

Set the X range of the chart.

setXRange(double, double) - Method in interface org.primordion.xholon.io.IHistogramViewer

Set the X range of the histogram.

setXcor(double) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's x coordinate.

setXcor(double) - Method in class org.primordion.xholon.base.Turtle

setXhType(int) - Method in interface org.primordion.xholon.base.IXholonClass

Set xholon type.

setXhType(int) - Method in class org.primordion.xholon.base.XholonClass

setXhc(IXholonClass) - Method in interface org.primordion.xholon.base.IXholon

Set the IXholonClass to which this Xholon instance belongs.

setXhc(IXholonClass) - Method in class org.primordion.xholon.base.Xholon

setXholonJarPath(String) - Method in interface org.primordion.xholon.io.IXmi2Xholon

Set the Xholon jar path, for use by the compiler.

setXholonJarPath(String) - Method in class org.primordion.xholon.io.Xmi2Xholon

setXhymAgent(String) - Method in class org.primordion.xholon.app.Application

xhymAgent

setXincludePath(String) - Static method in class org.primordion.xholon.app.Application

xincludePath

setXincludePath(String) - Static method in class org.primordion.xholon.base.ContainmentHierarchy

Set parameter XInclude path.

setXincludePath(String) - Static method in class org.primordion.xholon.base.InheritanceHierarchy

Set parameter XInclude path.

setY(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsm

setY(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmHistory

setY(int) - Static method in class org.primordion.xholon.xmiapps.XhTestFsmJunction

setY(int) - Static method in class org.primordion.xholon.xmiappsTc.XhTestFsm

setYFormat(String) - Method in class org.primordion.xholon.io.AbstractChartViewer

setYFormat(String) - Method in interface org.primordion.xholon.io.IChartViewer

Set the format of the y axis of the chart.

setYRange(double, double) - Method in class org.primordion.xholon.io.AbstractChartViewer

setYRange(double, double) - Method in class org.primordion.xholon.io.AbstractHistogramViewer

setYRange(double, double) - Method in interface org.primordion.xholon.io.IChartViewer

Set the Y range of the chart.

setYRange(double, double) - Method in interface org.primordion.xholon.io.IHistogramViewer

Set the Y range of the histogram.

setYcor(double) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's y coordinate.

setYcor(double) - Method in class org.primordion.xholon.base.Turtle

setup(EvolutionState, Parameter) - Method in class org.primordion.ealontro.ec.app.antforaging.AntForaging

setup(EvolutionState, Parameter) - Method in class org.primordion.ealontro.ec.app.cartcentering.CartCentering

setxy(double, double) - Method in interface org.primordion.xholon.base.ITurtle

Set the turtle's x and y coordinates, and move to that location.

setxy(double, double) - Method in class org.primordion.xholon.base.Turtle

sheepGainFromFood - Static variable in class org.primordion.user.app.WolfSheepGrass.WolfSheep

sheepReproduce - Static variable in class org.primordion.user.app.WolfSheepGrass.WolfSheep

shipDate - Variable in class org.primordion.user.app.Epo2.Item

showTree(IXholon) - Method in class org.primordion.xholon.io.XholonGui

Show the entire IXholon tree as a JTree.

showTurtle() - Method in interface org.primordion.xholon.base.ITurtle

Show in the viewer.

showTurtle() - Method in class org.primordion.xholon.base.Turtle

shuffle() - Method in interface org.primordion.xholon.base.IQueue

Randomize the order of the items in the queue.

shuffle() - Method in class org.primordion.xholon.base.Queue

sleep(long) - Static method in class org.primordion.xholon.base.XholonTime

sort() - Method in interface org.primordion.xholon.base.IQueue

Sort the items in the queue.

sort() - Method in class org.primordion.xholon.base.Queue

split - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch

split - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

sprout(IXholonClass, int, int) - Method in interface org.primordion.xholon.base.IPatch

Create a specified number of new turtles on the current patch.

sprout(IXholonClass, int, int) - Method in class org.primordion.xholon.base.Patch

st() - Method in interface org.primordion.xholon.base.ITurtle

Show in the viewer.

st() - Method in class org.primordion.xholon.base.Turtle

stamp() - Method in interface org.primordion.xholon.base.ITurtle

Leave an inprint or stamp of self at the current patch.

stamp() - Method in class org.primordion.xholon.base.Turtle

stampErase() - Method in interface org.primordion.xholon.base.ITurtle

Erase any inprint or stamp at the current patch.

stampErase() - Method in class org.primordion.xholon.base.Turtle

start(BundleContext) - Method in class org.primordion.xholon.transform.model.Activator

start - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch

start - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

startFresh() - Method in class org.primordion.ealontro.gp.XhSimpleEvolutionState

state - Variable in class org.primordion.cellontro.app.XhCell

state - Variable in class org.primordion.cellontro.app.XhCellAutop

state - Variable in class org.primordion.cellontro.app.XhLife

state - Variable in class org.primordion.ctrnn.base.XhAbstractCtrnn

state - Variable in class org.primordion.memcomp.app.XhFsm06ex1_Fsm

state - Variable in class org.primordion.memcomp.base.XhAbstractMemComp

state - Variable in class org.primordion.user.app.Epo2.USAddress

state - Static variable in class org.primordion.xholon.base.Control

Current state of the application.

state - Variable in class org.primordion.xholon.samples.XhTestFsm

state - Variable in class org.primordion.xholon.samples.XhTestFsmKW

state - Variable in class org.primordion.xholon.samples.XhTestFsmOrthog

state - Variable in class org.primordion.xholon.samples.XhTestFsmOrthogKW

state - Variable in class org.primordion.xholon.samples.XhWatch

state - Variable in class org.primordion.xholon.tutorials.XhHelloWorld

state - Variable in class org.primordion.xholon.tutorials.XhHelloWorld_NoXml

state - Variable in class org.primordion.xholon.tutorials.XhHelloWorld_TestTime

state - Variable in class org.primordion.xholon.tutorials.XhHelloWorld_str

state - Variable in class org.primordion.xholon.tutorials.rcs.XhRcs1

state - Variable in class org.primordion.xholon.tutorials.rcs.XhRcsTemp

state - Variable in class org.primordion.xholon.xmiapps.XhStopWatch

state - Variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

state - Variable in class org.primordion.xholon.xmiapps.XhTestFsm

state - Variable in class org.primordion.xholon.xmiapps.XhTestFsmOrthogonal

state - Variable in class org.primordion.xholon.xmiappsTc.XhTestFsm

stateName - Static variable in class org.primordion.xholon.base.Control

status - Variable in class org.primordion.user.app.Epo2.PurchaseOrder

step() - Method in class org.primordion.memcomp.app.AppFsm06ex1

stop(BundleContext) - Method in class org.primordion.xholon.transform.model.Activator

stop - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch

stop - Static variable in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym

street - Variable in class org.primordion.user.app.Epo2.USAddress

studentT - Static variable in class org.primordion.xholon.util.Random

stupidCellData - Static variable in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel15

stupidCellData - Static variable in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel16

stupidCellData - Static variable in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl

sum - Variable in class org.primordion.xholon.samples.XhPingPong

sumOfForces - Variable in class org.primordion.dynsys.app.XhTrain

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel12

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel13

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel14

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel15

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16

survivalProbability - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16nl

swapNode(IXholon) - Method in interface org.primordion.xholon.base.IXholon

Swap this node with otherNode.

swapNode(IXholon) - Method in class org.primordion.xholon.base.Xholon