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java.lang.Object org.primordion.xholon.base.Xholon org.primordion.xholon.base.XholonClass org.primordion.cellontro.base.BioXholonClass
BioXholonClass is an application specific extension of XholonClass. It encapsulates a geneVal, a featureType, and an activeObjectType.
Field Summary | |
int[] |
geneVal
|
boolean |
reversible
|
Fields inherited from class org.primordion.xholon.base.Xholon |
DEFAULT_LEVEL, interaction, interactionsEnabled |
Fields inherited from interface org.primordion.xholon.base.IXholon |
DEFAULT_SIZE_MSG_Q, NINCLUDE_PSC, NINCLUDE_PSx, NINCLUDE_PxC, NINCLUDE_Pxx, NINCLUDE_xSC, NINCLUDE_xSx, NINCLUDE_xxC, NINCLUDE_xxx |
Constructor Summary | |
BioXholonClass()
Constructor. |
Method Summary | |
void |
configure()
Perform some action, typically once at start up; MAY be overridden. |
int |
getActiveObjectType()
Get active object type. |
int |
getFeatureType()
Get feature type. |
void |
initialize()
Initialize the tree node. |
boolean |
isReversible()
Is this reaction reversible. |
void |
setActiveObjectType(int activeObjectType)
Set active object type. |
void |
setFeatureType(int featureType)
Set feature type. |
void |
setFeatureType(int[] smCount)
Set the feature type of an enzyme, based on how many substrates, products, activators, inhibitors, and coenzymes (features) it interacts with. |
java.lang.String |
toString()
|
Methods inherited from class org.primordion.xholon.base.XholonClass |
getClassNode, getClassNode, getConfigurationInstructions, getImplName, getInherHier, getMechanismName, getMechanismType, getName, getNextId, getXhType, getXhTypeName, hasAncestor, inOrderPrint, isActiveObject, isContainer, isPassiveObject, postOrderPrint, preOrderPrint, printNode, resetNextId, setImplName, setInherHier, setName, setNavInfo, setXhType |
Methods inherited from class java.lang.Object |
equals, getClass, hashCode, notify, notifyAll, wait, wait, wait |
Methods inherited from interface org.primordion.xholon.base.IXholonClass |
getConfigurationInstructions, getImplName, getXhType, hasAncestor, inOrderPrint, postOrderPrint, preOrderPrint, setImplName, setName, setNavInfo, setXhType |
Field Detail |
public boolean reversible
public int[] geneVal
Constructor Detail |
public BioXholonClass()
Method Detail |
public void initialize()
IXholon
initialize
in interface IXholon
initialize
in class XholonClass
public int getFeatureType()
IBioXholonClass
getFeatureType
in interface IBioXholonClass
public void setFeatureType(int featureType)
IBioXholonClass
setFeatureType
in interface IBioXholonClass
featureType
- The feature type.public boolean isReversible()
IBioXholonClass
isReversible
in interface IBioXholonClass
public void setFeatureType(int[] smCount)
IBioXholonClass
setFeatureType
in interface IBioXholonClass
smCount
- An array containing a count of various features.public int getActiveObjectType()
IBioXholonClass
getActiveObjectType
in interface IBioXholonClass
public void setActiveObjectType(int activeObjectType)
IBioXholonClass
setActiveObjectType
in interface IBioXholonClass
activeObjectType
- The active object type.public void configure()
IXholon
configure
in interface IXholon
configure
in class XholonClass
public java.lang.String toString()
toString
in class XholonClass
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