A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

I

IAbout - interface org.primordion.xholon.io.IAbout.
Display brief information about Xholon and the current Xholon application.
IActivity - interface org.primordion.xholon.base.IActivity.
An activity is a type of behavior.
IApplication - interface org.primordion.xholon.app.IApplication.
Every Xholon application proceeds through three phases, which are declared in this interface: (1) initialize, (2) process, (3) wrapup.
IAttribute - interface org.primordion.xholon.base.IAttribute.
Attribute.
IBioXholon - interface org.primordion.cellontro.base.IBioXholon.
An instance of IBioXholon represents some biological entity, and exists as a node in a composite structure hierarchy tree.
IBioXholonClass - interface org.primordion.cellontro.base.IBioXholonClass.
 
ICellontro2Sbml - interface org.primordion.xholon.io.ICellontro2Sbml.
Transforms a Cellontro model to SBML format.
IChartViewer - interface org.primordion.xholon.io.IChartViewer.
This interface should be implemented by concrete classes that capture data and display the data in a chart.
IContainmentHierarchy - interface org.primordion.xholon.base.IContainmentHierarchy.
A ContainmentHierarchy represents a hierarchy (tree) of Xholon nodes contained within other Xholon nodes.
ICtrnn - interface org.primordion.ctrnn.base.ICtrnn.
Continuous-Time Recurrent Neural Network (CTRNN).
IGraphicalNetworkViewer - interface org.primordion.xholon.io.IGraphicalNetworkViewer.
Interface for a graphical network viewer, for example AbstractNetworkViewerJung.
IGraphicalTreeViewer - interface org.primordion.xholon.io.IGraphicalTreeViewer.
Interface for a graphical tree viewer, for example TreeViewerJung.
IGrid - interface org.primordion.xholon.base.IGrid.
A grid is a structure containing M rows and N columns (gridCells).
IGridPanel - interface org.primordion.xholon.io.IGridPanel.
A graphic panel in which to display 2D grids.
IHistogramViewer - interface org.primordion.xholon.io.IHistogramViewer.
This interface should be implemented by concrete classes that capture data, and display the data in a histogram.
IInheritanceHierarchy - interface org.primordion.xholon.base.IInheritanceHierarchy.
An InheritanceHierarchy represents a hierarchy (tree) of XholonClass nodes that inherit from other XholonClass nodes.
IIntegration - class org.primordion.xholon.base.IIntegration.
Numerical integration package.
IIntegration() - Constructor for class org.primordion.xholon.base.IIntegration
 
IInteraction - interface org.primordion.xholon.base.IInteraction.
UML 2.0 Interaction.
IMembraneComputing - interface org.primordion.memcomp.base.IMembraneComputing.
Membrane Computing.
IMessage - interface org.primordion.xholon.base.IMessage.
ROOM/UML2 message.
INCREMENT_DATE - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_DATE - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
INCREMENT_DAY - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_DAY - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
INCREMENT_HOUR - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_HOUR - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
INCREMENT_MIN - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_MIN - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
INCREMENT_MONTH - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_MONTH - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
INCREMENT_SEC - Static variable in class org.primordion.xholon.samples.XhWatch
 
INCREMENT_SEC - Static variable in class org.primordion.xholon.xmiapps.XhWatch
 
IObservable - interface org.primordion.xholon.base.IObservable.
An Observable is a Xholon that is observed by another Xholon.
IPatch - interface org.primordion.xholon.base.IPatch.
A patch is an agent in the turtle mechanism.
IPort - interface org.primordion.xholon.base.IPort.
IPort defines the abstract services that ports provide.
IPortInterface - interface org.primordion.xholon.base.IPortInterface.
A port interface is either a provided or a required interface for one or more ports.
IQueue - interface org.primordion.xholon.base.IQueue.
This is a generic Queue data structure that can be used to store references to any type of data.
IReflection - interface org.primordion.xholon.base.IReflection.
Reflection supports a metadata capability.
ISbml2Cellontro - interface org.primordion.xholon.io.ISbml2Cellontro.
ISbml2Cellontro transforms SBML files into Xholon/Cellontro model files.
ISignal - interface org.primordion.xholon.base.ISignal.
A signal is just an int, that identifies a type of Message.
ISnapshot - interface org.primordion.xholon.io.ISnapshot.
Take a shapshot of an entire Xholon tree.
IStateMachineEntity - interface org.primordion.xholon.base.IStateMachineEntity.
A state machine entity is any XholonClass that has to do with state machines.
ITreeNodeFactory - interface org.primordion.xholon.base.ITreeNodeFactory.
A tree node factory creates and manages Xholon tree nodes.
ITurtle - interface org.primordion.xholon.base.ITurtle.
A turtle is an agent in the turtle mechanism.
ITurtlePatchColor - interface org.primordion.xholon.base.ITurtlePatchColor.
A turtle or patch is assigned a color in the turtle mechanism.
IViewer - interface org.primordion.xholon.io.IViewer.
All Xholon viewer interfaces should extend this interface.
IVrmlColor - interface org.primordion.xholon.io.vrml.IVrmlColor.
VRML IVrmlColor.
IVrmlWriter - interface org.primordion.xholon.io.vrml.IVrmlWriter.
VRML IVrmlWriter.
IXHOLON - Static variable in class org.primordion.xholon.base.XPathConstants
The Xholon data type.
IXPath - interface org.primordion.xholon.base.IXPath.
The XML Path Language (XPath) is an internet W3C standard, that defines how to locate nodes in a tree.
IXholon - interface org.primordion.xholon.base.IXholon.
A Xholon is a node within a hierarchical tree structure, and builds on the capabilities of tree nodes.
IXholon2Qep - interface org.primordion.xholon.io.IXholon2Qep.
Output Java file(s) in Quantum Event Processor (QEP) format.
IXholon2Scxml - interface org.primordion.xholon.io.IXholon2Scxml.
Output an XML file in SCXML format.
IXholon2Smc - interface org.primordion.xholon.io.IXholon2Smc.
Output an XML file in SMC format.
IXholonClass - interface org.primordion.xholon.base.IXholonClass.
A XholonClass is a concrete subclass of TreeNode.
IXholonTime - interface org.primordion.xholon.base.IXholonTime.
Handle time in a Xholon application.
IXmi2Xholon - interface org.primordion.xholon.io.IXmi2Xholon.
Transform XMI-formatted files into Xholon format.
IfCarryingFood - class org.primordion.ealontro.ec.app.antforaging.IfCarryingFood.
 
IfCarryingFood() - Constructor for class org.primordion.ealontro.ec.app.antforaging.IfCarryingFood
 
IfFoodHere - class org.primordion.ealontro.ec.app.antforaging.IfFoodHere.
 
IfFoodHere() - Constructor for class org.primordion.ealontro.ec.app.antforaging.IfFoodHere
 
IleCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
IndependentVariableCE - Static variable in interface org.primordion.dynsys.app.CeFibonacci
 
IndicatorCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator
 
IndicatorCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator
 
InferiorMesentericGanglionCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
InheritanceHierarchy - class org.primordion.xholon.base.InheritanceHierarchy.
An InheritanceHierarchy represents a hierarchy (tree) of XholonClass nodes that inherit from other XholonClass nodes.
InheritanceHierarchy() - Constructor for class org.primordion.xholon.base.InheritanceHierarchy
 
InitialNodeCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActivityEntity
 
InjectButtonCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch
 
InorganicPrecursorCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
InputPinCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity
 
InterNeuronCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
Interaction - class org.primordion.xholon.base.Interaction.
UML 2.0 Interaction.
Interaction() - Constructor for class org.primordion.xholon.base.Interaction
Constructor.
InteractionsCE - Static variable in interface org.primordion.xholon.common.viewer.CeInteractions
 
InterestCE - Static variable in interface org.primordion.dynsys.app.CeInterest
 
InterestRateCE - Static variable in interface org.primordion.dynsys.app.CeInterest
 
InterestSystemCE - Static variable in interface org.primordion.dynsys.app.CeInterest
 
IntermediateFilamentCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
InternalSpaceCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
InvocationActionCE - Static variable in interface org.primordion.xholon.common.mechanism.CeUMLActionEntity
 
IonCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
Irr_Sb1_Pr1_Ac0_In0_Co0 - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb1_Pr1_Ac0_In0_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb1_Pr1_Ac0_In1_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb1_Pr1_Ac1_In0_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb1_Pr1_AcN_InN_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb1_Pr2_Ac0_In0_Co0 - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
Irr_Sb2_Pr1_Ac0_In0_CoN - Static variable in interface org.primordion.cellontro.base.IBioXholonClass
 
IsocitrateCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
IsocitrateCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel
 
IsocitrateDehydrogenaseCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
IsocitrateDehydrogenaseCE - Static variable in interface org.primordion.cellontro.app.sbml.CeCellModel
 
Item - class org.primordion.user.app.Epo2.Item.
Extended Purchase Order example.
Item() - Constructor for class org.primordion.user.app.Epo2.Item
 
ItemCE - Static variable in interface org.primordion.user.app.Epo2.CeEpo2
 
inCone(double, double) - Method in interface org.primordion.xholon.base.ITurtle
Return agents that fall within a cone defined by the distance and angle .
inCone(double, double) - Method in class org.primordion.xholon.base.Turtle
 
inOrderPrint(int) - Method in interface org.primordion.xholon.base.IXholon
In-order print.
inOrderPrint(int) - Method in interface org.primordion.xholon.base.IXholonClass
 
inOrderPrint(int) - Method in class org.primordion.xholon.base.Xholon
 
inOrderPrint(int) - Method in class org.primordion.xholon.base.XholonClass
 
inRadius(int) - Method in interface org.primordion.xholon.base.IPatch
Return a list of all neighbors (patches) within the specified radius.
inRadius(int, int) - Method in interface org.primordion.xholon.base.IPatch
Return a list of all neighbors (patches) within the specified radius.
inRadius(int) - Method in interface org.primordion.xholon.base.ITurtle
Return a list of all neighbors (turtles) within the specified radius.
inRadius(int, int) - Method in interface org.primordion.xholon.base.ITurtle
Return a list of all neighbors (turtles) within the specified radius.
inRadius(int) - Method in class org.primordion.xholon.base.Patch
This works for a torus or grid where each cell has 8 neighbors.
inRadius(int, int) - Method in class org.primordion.xholon.base.Patch
This works for a torus or grid where each cell has 8 neighbors.
inRadius(int) - Method in class org.primordion.xholon.base.Turtle
 
inRadius(int, int) - Method in class org.primordion.xholon.base.Turtle
 
inRadius(int) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel11
Return a filtered list of all neighbors within the specified radius.
inRadius(int) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel12
Return a filtered list of all neighbors within the specified radius.
inRadius(int) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel13
Return a filtered list of all neighbors within the specified radius.
inRadius(int) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel14
Return a filtered list of all neighbors within the specified radius.
inRadius(int) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel15
Return a filtered list of all neighbors within the specified radius.
inRadius(int, boolean) - Method in class org.primordion.xholon.tutorials.StupidModel.HabitatCellStupidModel16
Return a filtered list of all neighbors within the specified radius.
incPheneVal(double) - Method in class org.primordion.cellontro.app.XhAbstractSbml
 
incPheneVal(double) - Method in class org.primordion.cellontro.app.XhCell
 
incPheneVal(double) - Method in class org.primordion.cellontro.app.XhCellAutop
 
incPheneVal(double) - Method in class org.primordion.cellontro.app.XhLife
 
incPheneVal(double) - Method in interface org.primordion.cellontro.base.IBioXholon
Increment the phene value by incAmount.
incRawFitness(int) - Method in class org.primordion.ealontro.app.XhAntForaging
Increase the raw fitness of this GeneticProgram.
incVal(double) - Method in class org.primordion.ealontro.app.XhAntTrail
 
incVal(double) - Method in class org.primordion.ealontro.app.XhCartCentering
 
incVal(double) - Method in class org.primordion.ealontro.app.XhEcjAntTrail
 
incVal(double) - Method in class org.primordion.ealontro.app.XhTutorial4
 
incVal(double) - Method in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering
 
incVal(double) - Method in class org.primordion.user.app.Epo2.XhEpo2
 
incVal(double) - Method in class org.primordion.user.app.XhBrenda
 
incVal(double) - Method in class org.primordion.xholon.base.Attribute.Attribute_double
 
incVal(double) - Method in class org.primordion.xholon.base.Attribute.Attribute_float
 
incVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_int
 
incVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_long
 
incVal(int) - Method in class org.primordion.xholon.base.Attribute.Attribute_short
 
incVal(double) - Method in interface org.primordion.xholon.base.IXholon
Increment an internal double value by a specified amount.
incVal(int) - Method in interface org.primordion.xholon.base.IXholon
Increment an internal int value by a specified amount.
incVal(double) - Method in class org.primordion.xholon.base.Xholon
 
incVal(int) - Method in class org.primordion.xholon.base.Xholon
 
incVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcs1
 
incVal(double) - Method in class org.primordion.xholon.tutorials.rcs.XhRcsTemp
 
incVal(double) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM
 
incVal(int) - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid
 
incVal(double) - Method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__
 
includeCE - Static variable in interface org.primordion.cellontro.app.CeLife
 
includeCE - Static variable in interface org.primordion.dynsys.app.CeGravity1
 
includeCE - Static variable in interface org.primordion.dynsys.app.CeInterest
 
includeCE - Static variable in interface org.primordion.dynsys.app.CeTrain
 
includeCE - Static variable in interface org.primordion.user.app.CeTurtleExample1
 
includeCE - Static variable in interface org.primordion.user.app.WolfSheepGrass.CeWolfSheepGrass
 
includeCE - Static variable in interface org.primordion.xholon.samples.Ce1dSimple
 
includeCE - Static variable in interface org.primordion.xholon.samples.CeCombo
 
includeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs1
 
includeCE - Static variable in interface org.primordion.xholon.tutorials.rcs.CeRcs2
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeElevator
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeFsm06ex1_Fsm
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeHelloWorldTutorial
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeHelloWorldTutorial_multiWorld
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeHelloWorldTutorial_plus
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeHelloWorldTutorial_universe
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeProvidedRequiredTest
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_FSM_Grid
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeRcs_GP_MM_NoSymbols
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeStopWatch_Xhym
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeTestFsm
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeTestFsmForkJoin
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeTestFsmHistory
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeTestFsmJunction
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeTestFsmOrthogonal
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.CeWatch
 
includeCE - Static variable in interface org.primordion.xholon.xmiapps.Ce__XholonTemplate__
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsArgoUML.CeHelloWorldTutorial
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeElevator
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeHelloWorldTutorial
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeHelloWorldTutorial_multiWorld
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeStateMachineOnly
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTc.CeTestFsm
 
includeCE - Static variable in interface org.primordion.xholon.xmiappsTcSysML.CeHelloWorldTutorialSysML
 
infoM - Static variable in class org.primordion.xholon.base.Msg
 
information() - Method in class org.primordion.xholon.app.Application
 
information() - Method in interface org.primordion.xholon.app.IApplication
Display detailed information about the application.
init() - Method in class org.primordion.xholon.io.vrml.VrmlBuffer
Initialize the internal buffer.
initControl() - Method in class org.primordion.xholon.app.Application
 
initControl() - Method in interface org.primordion.xholon.app.IApplication
Initialize the control aspects of the application.
initControl() - Method in class org.primordion.xholon.tutorials.AppHelloWorld_NoXml
Disable control xholons.
initGridPanel(IXholon) - Method in class org.primordion.xholon.io.GridPanel
 
initGridPanel(IXholon) - Method in interface org.primordion.xholon.io.IGridPanel
Initialize the GridPanel.
initGui(Object) - Method in class org.primordion.xholon.app.Application
 
initGui(Object) - Method in interface org.primordion.xholon.app.IApplication
Initialize the GUI.
initStatics() - Method in interface org.primordion.xholon.base.IXholon
Initialize any static varibles that can't be statically initialized.
initStatics() - Method in class org.primordion.xholon.base.Xholon
 
initStatics() - Method in class org.primordion.xholon.tutorials.rcs.XhRcs2
 
initStatics() - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_MM
 
initViewers() - Method in class org.primordion.xholon.app.Application
 
initViewers() - Method in interface org.primordion.xholon.app.IApplication
Initialize any View tools to be used by the application.
initWhenMoved(int) - Method in interface org.primordion.xholon.base.ITurtle
Initialize the whenMoved variable.
initWhenMoved(int) - Method in class org.primordion.xholon.base.Turtle
 
initialBugSizeMean - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel14
 
initialBugSizeMean - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel15
 
initialBugSizeMean - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16
 
initialBugSizeMean - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16nl
 
initialBugSizeSD - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel14
 
initialBugSizeSD - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel15
 
initialBugSizeSD - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16
 
initialBugSizeSD - Static variable in class org.primordion.xholon.tutorials.StupidModel.BugStupidModel16nl
 
initialNumberSheep - Static variable in class org.primordion.user.app.WolfSheepGrass.WolfSheep
 
initialNumberWolves - Static variable in class org.primordion.user.app.WolfSheepGrass.WolfSheep
 
initialize(String) - Method in class org.primordion.cellontro.app.AppCell
 
initialize(String) - Method in class org.primordion.cellontro.app.AppLife
 
initialize(String) - Method in class org.primordion.cellontro.app.AppSbml
 
initialize() - Method in class org.primordion.cellontro.app.XhAbstractSbml
 
initialize() - Method in class org.primordion.cellontro.app.XhCell
 
initialize() - Method in class org.primordion.cellontro.app.XhCellAutop
 
initialize() - Method in class org.primordion.cellontro.app.XhLife
 
initialize() - Method in class org.primordion.cellontro.base.BioXholonClass
 
initialize(String, String, IXholon) - Method in class org.primordion.cellontro.io.sbml.Cellontro2Sbml
 
initialize(String) - Method in class org.primordion.cellontro.io.sbml.Sbml2Cellontro
 
initialize() - Method in class org.primordion.ctrnn.base.XhAbstractCtrnn
 
initialize() - Method in class org.primordion.dynsys.app.XhFibonacci
 
initialize() - Method in class org.primordion.dynsys.app.XhGravity1
 
initialize() - Method in class org.primordion.dynsys.app.XhInterest
 
initialize() - Method in class org.primordion.dynsys.app.XhTrain
 
initialize(String) - Method in class org.primordion.ealontro.app.AppAntForaging
 
initialize(String) - Method in class org.primordion.ealontro.app.AppAntTrail
 
initialize(String) - Method in class org.primordion.ealontro.app.AppCartCentering
 
initialize(String) - Method in class org.primordion.ealontro.app.AppEcj
 
initialize(String) - Method in class org.primordion.ealontro.app.AppTutorial4
 
initialize() - Method in class org.primordion.ealontro.app.XhAntForaging
 
initialize() - Method in class org.primordion.ealontro.app.XhAntTrail
 
initialize() - Method in class org.primordion.ealontro.app.XhCartCentering
 
initialize() - Method in class org.primordion.ealontro.app.XhEcjAntTrail
 
initialize() - Method in class org.primordion.ealontro.app.XhEcjTutorial4
 
initialize() - Method in class org.primordion.ealontro.app.XhTutorial4
 
initialize() - Method in class org.primordion.ealontro.ec.app.cartcentering.XhEcjCartCentering
 
initialize() - Method in class org.primordion.memcomp.app.XhFsm06ex1_Fsm
 
initialize() - Method in class org.primordion.memcomp.base.XhAbstractBraneCalc
 
initialize() - Method in class org.primordion.memcomp.base.XhAbstractMemComp
 
initialize(String) - Method in class org.primordion.user.app.AppBrenda
 
initialize(String) - Method in class org.primordion.user.app.AppTurtleExample1
 
initialize(String) - Method in class org.primordion.user.app.Epo2.AppEpo2
 
initialize() - Method in class org.primordion.user.app.Epo2.XhEpo2
 
initialize() - Method in class org.primordion.user.app.TurtleExample1
 
initialize(String) - Method in class org.primordion.user.app.WolfSheepGrass.AppWolfSheepGrass
 
initialize() - Method in class org.primordion.user.app.WolfSheepGrass.WolfSheep
 
initialize() - Method in class org.primordion.user.app.WolfSheepGrass.XhWolfSheepGrass
 
initialize() - Method in class org.primordion.user.app.XhBrenda
 
initialize() - Method in class org.primordion.user.app.XhTurtleExample1
 
initialize(String) - Method in class org.primordion.xholon.app.Application
 
initialize(String) - Method in interface org.primordion.xholon.app.IApplication
Initialize the application.
initialize() - Method in class org.primordion.xholon.base.AbstractGrid
 
initialize() - Method in class org.primordion.xholon.base.Control
 
initialize() - Method in interface org.primordion.xholon.base.IXholon
Initialize the tree node.
initialize() - Method in class org.primordion.xholon.base.StateMachineEntity
 
initialize() - Method in class org.primordion.xholon.base.Xholon
 
initialize() - Method in class org.primordion.xholon.base.XholonClass
 
initialize() - Method in class org.primordion.xholon.base.XholonWithPorts
 
initialize(IXholon, int) - Method in class org.primordion.xholon.io.ChartViewerGnuplot
 
initialize(IXholon, int) - Method in class org.primordion.xholon.io.ChartViewerJFreeChart
Initialize the chart viewer.
initialize(IXholon, IXholon, IXholonClass, int, int) - Method in class org.primordion.xholon.io.HistogramViewerGnuplot
This method may not be useful for the Gnuplot concrete class.
initialize(IXholon, IXholon, IXholonClass, int, int, String, String, int) - Method in class org.primordion.xholon.io.HistogramViewerGnuplot
Initialize the histogram viewer.
initialize(IXholon, IXholon, IXholonClass, int, int) - Method in class org.primordion.xholon.io.HistogramViewerJFreeChart
 
initialize(String, String, IXholon) - Method in interface org.primordion.xholon.io.ICellontro2Sbml
Initialize.
initialize(IXholon, int) - Method in interface org.primordion.xholon.io.IChartViewer
Initialize the chart viewer.
initialize(IXholon, IXholon, IXholonClass, int, int) - Method in interface org.primordion.xholon.io.IHistogramViewer
Initialize the histogram viewer.
initialize(String) - Method in interface org.primordion.xholon.io.ISbml2Cellontro
Initialize the reader, document and model.
initialize(String, String, IXholon) - Method in interface org.primordion.xholon.io.IXholon2Qep
Initialize.
initialize(String, String, IXholon) - Method in interface org.primordion.xholon.io.IXholon2Scxml
Initialize.
initialize(String, String, IXholon) - Method in interface org.primordion.xholon.io.IXholon2Smc
Initialize.
initialize(String, String, IXholon) - Method in class org.primordion.xholon.io.Xholon2Qep
 
initialize(String, String, IXholon) - Method in class org.primordion.xholon.io.Xholon2Scxml
 
initialize(String, String, IXholon) - Method in class org.primordion.xholon.io.Xholon2Smc
 
initialize() - Method in class org.primordion.xholon.samples.Xh09SpatialGames
 
initialize() - Method in class org.primordion.xholon.samples.Xh1dSimple
 
initialize() - Method in class org.primordion.xholon.samples.XhCollisions
 
initialize() - Method in class org.primordion.xholon.samples.XhCombo
 
initialize() - Method in class org.primordion.xholon.samples.XhGameOfLife
 
initialize() - Method in class org.primordion.xholon.samples.XhGeneric
 
initialize() - Method in class org.primordion.xholon.samples.XhHex
 
initialize() - Method in class org.primordion.xholon.samples.XhPingPong
 
initialize() - Method in class org.primordion.xholon.samples.XhTestFsm
 
initialize() - Method in class org.primordion.xholon.samples.XhTestFsmKW
 
initialize() - Method in class org.primordion.xholon.samples.XhTestFsmOrthog
 
initialize() - Method in class org.primordion.xholon.samples.XhTestFsmOrthogKW
 
initialize() - Method in class org.primordion.xholon.samples.XhWatch
 
initialize(String) - Method in class org.primordion.xholon.tutorials.AppHelloWorld_NoXml
 
initialize() - Method in class org.primordion.xholon.tutorials.XhHelloWorld
 
initialize() - Method in class org.primordion.xholon.tutorials.XhHelloWorld_NoXml
 
initialize() - Method in class org.primordion.xholon.tutorials.XhHelloWorld_TestTime
 
initialize() - Method in class org.primordion.xholon.tutorials.XhHelloWorld_str
 
initialize() - Method in class org.primordion.xholon.tutorials.rcs.XhRcs1
 
initialize() - Method in class org.primordion.xholon.tutorials.rcs.XhRcs2
 
initialize() - Method in class org.primordion.xholon.tutorials.rcs.XhRcsTemp
 
initialize(String) - Method in class org.primordion.xholon.xmiapps.App__XholonTemplate__
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhElevator
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhFsm06ex1_Fsm
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_multiWorld
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_plus
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhHelloWorldTutorial_universe
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhProvidedRequiredTest
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_FSM_Grid
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_MM
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhRcs_GP_MM_NoSymbols
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhStopWatch
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhStopWatch_Xhym
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhTestFsm
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhTestFsmForkJoin
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhTestFsmHistory
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhTestFsmJunction
 
initialize() - Method in class org.primordion.xholon.xmiapps.XhTestFsmOrthogonal
 
initialize() - Method in class org.primordion.xholon.xmiapps.Xh__XholonTemplate__
 
initialize() - Method in class org.primordion.xholon.xmiappsTc.XhElevator
 
initialize() - Method in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial
 
initialize() - Method in class org.primordion.xholon.xmiappsTc.XhHelloWorldTutorial_multiWorld
 
initialize() - Method in class org.primordion.xholon.xmiappsTc.XhStateMachineOnly
 
initialize() - Method in class org.primordion.xholon.xmiappsTc.XhTestFsm
 
initialize() - Method in class org.primordion.xholon.xmiappsTcSysML.XhHelloWorldTutorialSysML
 
initializeStateMachines() - Static method in class org.primordion.xholon.base.StateMachineEntity
Initialize all state machines.
input - Variable in class org.primordion.ctrnn.base.XhAbstractCtrnn
 
input - Variable in class org.primordion.ealontro.ec.app.antforaging.AntForaging
 
input - Variable in class org.primordion.ealontro.ec.app.cartcentering.CartCentering
 
insertAfter(IXholon) - Method in interface org.primordion.xholon.base.IXholon
Insert this node after its new previous sibling node.
insertAfter(IXholon) - Method in class org.primordion.xholon.base.Xholon
 
insertBefore(IXholon) - Method in interface org.primordion.xholon.base.IXholon
Insert this node before its new next sibling node.
insertBefore(IXholon) - Method in class org.primordion.xholon.base.Xholon
 
insertFirstChild(IXholon) - Method in interface org.primordion.xholon.base.IXholon
Insert this node as the first child of its new parent node.
insertFirstChild(IXholon) - Method in class org.primordion.xholon.base.Xholon
 
interaction - Static variable in class org.primordion.xholon.base.Xholon
 
interactionsEnabled - Static variable in class org.primordion.xholon.base.Xholon
 
invokeDataPlotter() - Method in class org.primordion.xholon.app.Application
 
invokeDataPlotter() - Method in interface org.primordion.xholon.app.IApplication
Invoke the data plotter.
invokeDataPlotter() - Method in class org.primordion.xholon.xmiapps.AppElevator_ShowStates
 
invokeDataPlotter() - Method in class org.primordion.xholon.xmiappsTc.AppElevator
 
invokeGraphicalNetworkViewer(IXholon, String) - Method in class org.primordion.xholon.app.Application
 
invokeGraphicalNetworkViewer() - Method in class org.primordion.xholon.app.Application
 
invokeGraphicalNetworkViewer() - Method in interface org.primordion.xholon.app.IApplication
Invoke the graphical network viewer.
invokeGraphicalNetworkViewer(IXholon, String) - Method in interface org.primordion.xholon.app.IApplication
Invoke the graphical network viewer.
invokeGraphicalTreeViewer(IXholon, String) - Method in class org.primordion.xholon.app.Application
 
invokeGraphicalTreeViewer() - Method in class org.primordion.xholon.app.Application
 
invokeGraphicalTreeViewer() - Method in interface org.primordion.xholon.app.IApplication
Invoke the graphical tree viewer.
invokeGraphicalTreeViewer(IXholon, String) - Method in interface org.primordion.xholon.app.IApplication
Invoke the graphical tree viewer.
invokeHistogramPlotter() - Method in class org.primordion.xholon.app.Application
 
invokeHistogramPlotter() - Method in interface org.primordion.xholon.app.IApplication
Invoke the histogram plotter.
invokeInteraction() - Method in class org.primordion.xholon.app.Application
 
invokeInteraction() - Method in interface org.primordion.xholon.app.IApplication
Invoke the interaction viewer.
isActive() - Method in class org.primordion.xholon.io.AbstractNetworkViewerJung
Is this viewer active?
isActive() - Method in interface org.primordion.xholon.io.IGraphicalNetworkViewer
Is this network viewer active? If it's active then it can be refreshed.
isActiveObject() - Method in interface org.primordion.xholon.base.IXholon
Is this xholon or xholon class an Active Object?
isActiveObject() - Method in class org.primordion.xholon.base.Xholon
 
isActiveObject() - Method in class org.primordion.xholon.base.XholonClass
 
isActiveObject() - Method in class org.primordion.xholon.base.XholonWithPorts
 
isActiveSubState() - Method in interface org.primordion.xholon.base.IStateMachineEntity
Is this a currently active sub state of some other state or of the state machine as a whole?
isActiveSubState() - Method in class org.primordion.xholon.base.StateMachineEntity
 
isAlive() - Method in class org.primordion.xholon.samples.XhCombo
Is this grid cell alive?
isAlive() - Method in class org.primordion.xholon.samples.XhHex
Is this grid cell alive?
isBound(IXholon) - Method in interface org.primordion.xholon.base.IXholon
Is this port bound to anything? If a port is bound, then it will be possible for the local IXholon to send a message to, or get/set a val on, a remote IXholon.
isBound(IXholon) - Method in class org.primordion.xholon.base.Port
 
isBound(IXholon) - Method in class org.primordion.xholon.base.Xholon
 
isBound(IXholon) - Method in class org.primordion.xholon.base.XholonWithPorts
 
isComputationComplete() - Static method in class org.primordion.memcomp.base.XhAbstractMemComp
Is the computation complete?
isComputationSuccessful() - Static method in class org.primordion.memcomp.base.XhAbstractMemComp
Is the computation successful?
isContainer() - Method in interface org.primordion.xholon.base.IXholon
Is this xholon or xholon class a Container?
isContainer() - Method in class org.primordion.xholon.base.Xholon
 
isContainer() - Method in class org.primordion.xholon.base.XholonClass
 
isContainer() - Method in class org.primordion.xholon.base.XholonWithPorts
 
isEven(int) - Static method in class org.primordion.xholon.util.Misc
Is this an even number?
isExternal() - Method in interface org.primordion.xholon.base.IXholon
Is this an external node (no child or siblings).
isExternal() - Method in class org.primordion.xholon.base.Xholon
 
isGrabbed - Variable in class org.primordion.user.app.WolfSheepGrass.WolfSheep
 
isHidden - Variable in class org.primordion.xholon.base.Turtle
 
isInternal() - Method in interface org.primordion.xholon.base.IXholon
Is this an internal node (has child and/or siblings).
isInternal() - Method in class org.primordion.xholon.base.Xholon
 
isLeaf() - Method in interface org.primordion.xholon.base.IXholon
Is this a leaf node (has no child, but may have siblings).
isLeaf() - Method in class org.primordion.xholon.base.Xholon
 
isMathSymbol(char) - Static method in class org.primordion.xholon.util.Misc
Is this a math symbol? This method takes the place of calling if (Character.getType(symbol) == Character.MATH_SYMBOL)
isPassiveObject() - Method in interface org.primordion.xholon.base.IXholon
Is this xholon or xholon class a Passive Object?
isPassiveObject() - Method in class org.primordion.xholon.base.Xholon
 
isPassiveObject() - Method in class org.primordion.xholon.base.XholonClass
 
isPassiveObject() - Method in class org.primordion.xholon.base.XholonWithPorts
 
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel10
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel11
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel12
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel13
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel14
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel15
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel16nl
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel7
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel8
Is all desired or possible processing complete?
isProcessingComplete() - Static method in class org.primordion.xholon.tutorials.StupidModel.XhStupidModel9
Is all desired or possible processing complete?
isReversible() - Method in class org.primordion.cellontro.base.BioXholonClass
 
isReversible() - Method in interface org.primordion.cellontro.base.IBioXholonClass
Is this reaction reversible.
isRootNode() - Method in interface org.primordion.xholon.base.IXholon
Is this the root node of the tree (does it have a parent).
isRootNode() - Method in class org.primordion.xholon.base.Xholon
 
isdigit(int) - Static method in class org.primordion.xholon.util.Misc
Is this a digit, a value between 0 and 9.

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