org.primordion.memcomp.base
Class XhAbstractBraneCalc

java.lang.Object
  org.primordion.xholon.base.Xholon
      org.primordion.xholon.base.XholonWithPorts
          org.primordion.memcomp.base.XhAbstractBraneCalc

All Implemented Interfaces:

IXholon

Direct Known Subclasses:

XhBraneCalc1

public class XhAbstractBraneCalc

extends XholonWithPorts

Brane Calculus.

Since:

0.3 (Created on Jan 14, 2006)

Author:

Ken Webb

Field Summary

static int	P_MEMBRANEP
static int	P_MEMBRANEQ
static int	P_PATCH
java.lang.String	roleName

Fields inherited from class org.primordion.xholon.base.XholonWithPorts

port

Fields inherited from class org.primordion.xholon.base.Xholon

DEFAULT_LEVEL, interaction, interactionsEnabled

Fields inherited from interface org.primordion.xholon.base.IXholon

DEFAULT_SIZE_MSG_Q, NINCLUDE_PSC, NINCLUDE_PSx, NINCLUDE_PxC, NINCLUDE_Pxx, NINCLUDE_xSC, NINCLUDE_xSx, NINCLUDE_xxC, NINCLUDE_xxx

Constructor Summary

XhAbstractBraneCalc()

Method Summary

void	bud(IXholon membraneP, IXholon membraneQ, IXholon patchS) Bud - Split off an inner membrane.
void	drip(IXholon membraneP, IXholon patchS) Drip - Split off zero inner membranes.
void	exo(IXholon membraneP, IXholon membraneQ) Exo - Exocytosis
java.lang.String	getRoleName() Get name of the role played by this Xholon within a specific context.
void	initialize() Initialize the tree node.
void	mate(IXholon membraneP, IXholon membraneQ, IXholon patchS) Mate - Merge two membranes.
void	phago(IXholon membraneP, IXholon membraneQ, IXholon patchS) Phago - Phagocytosis
void	pino(IXholon membraneP, IXholon patchS) Pino - Pinocytosis.
void	setRoleName(java.lang.String roleName) Set name of the role played by this Xholon within a specific context.
java.lang.String	toString()

Methods inherited from class org.primordion.xholon.base.XholonWithPorts

configure, getMaxPorts, getPort, isActiveObject, isBound, isContainer, isPassiveObject, postConfigure, setMaxPorts, setPorts, terminate

Methods inherited from class org.primordion.xholon.base.Xholon

act, appendChild, appendChild, appendChild, cleanup, configure, createStructure, decVal, decVal, depth, draw, getChildNodes, getFirstChild, getFirstSibling, getId, getLastChild, getLastSibling, getName, getNeighbors, getNextId, getNextSibling, getNthChild, getNthSibling, getNumChildren, getNumSiblings, getParentNode, getPreviousSibling, getRootNode, getSiblings, getSizeMessageQ, getUid, getVal_boolean, getVal_byte, getVal_char, getVal_double, getVal_float, getVal_int, getVal_long, getVal_Object, getVal_short, getVal_String, getVal, getXhc, getXhcId, getXhcName, getXhType, handleNodeSelection, hasAncestor, hasChildNodes, hasChildOrSiblingNodes, hasNextSibling, hasParentNode, height, incVal, incVal, initStatics, inOrderPrint, insertAfter, insertBefore, insertFirstChild, isExternal, isInternal, isLeaf, isRootNode, performActivity, performActivity, performBooleanActivity, performBooleanActivity, performDoubleActivity, performGuard, performVoidActivity, postAct, postOrderPrint, postReconfigure, preAct, preConfigure, preOrderPrint, preReconfigure, print, println, processMessageQ, processReceivedMessage, reconfigure, remove, removeChild, resetNextId, sendMessage, sendMessage, sendMessage, setAttributeVal, setFactory, setFirstChild, setId, setNextSibling, setParentChildLinks, setParentNode, setParentSiblingLinks, setSizeMessageQ, setUid, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVariableValue, setXhc, swapNode, treeSize, writeXml

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

P_MEMBRANEP

public static final int P_MEMBRANEP

See Also:

Constant Field Values

P_MEMBRANEQ

public static final int P_MEMBRANEQ

See Also:

Constant Field Values

P_PATCH

public static final int P_PATCH

See Also:

Constant Field Values

roleName

public java.lang.String roleName

Constructor Detail

XhAbstractBraneCalc

public XhAbstractBraneCalc()

Method Detail

initialize

public void initialize()

Description copied from interface: IXholon

Initialize the tree node. Typically this is only used to re-initialize a node, such as when it is reused through the TreeNodeFactoryStatic.

Specified by:

initialize in interface IXholon

Overrides:

initialize in class XholonWithPorts

setRoleName

public void setRoleName(java.lang.String roleName)

Description copied from interface: IXholon

Set name of the role played by this Xholon within a specific context.

Specified by:

setRoleName in interface IXholon

Overrides:

setRoleName in class Xholon

getRoleName

public java.lang.String getRoleName()

Description copied from interface: IXholon

Get name of the role played by this Xholon within a specific context.

Specified by:

getRoleName in interface IXholon

Overrides:

getRoleName in class Xholon

phago

public void phago(IXholon membraneP,
                  IXholon membraneQ,
                  IXholon patchS)

Phago - Phagocytosis

Membrane P with its internal contents, and part of the fluid environment that surrounds membrane P, are engulfed by membrane Q.

Parameters:

membraneP - An independent membrane which will be taken inside membraneQ.

membraneQ - An independent membrane that will take membraneP and patchS inside it.

patchS - A patch of membraneP.

exo

public void exo(IXholon membraneP,
                IXholon membraneQ)

Exo - Exocytosis

The contents of membrane P are expelled to the fluid environment surrounding membrane Q, while membrane P itself becomes part of membrane Q.

Parameters:

membraneP - The initially internal membrane.

membraneQ - The initially external membrane.

pino

public void pino(IXholon membraneP,
                 IXholon patchS)

Pino - Pinocytosis.

Membrane P engulfs part of the surrounding environment.

mate

public void mate(IXholon membraneP,
                 IXholon membraneQ,
                 IXholon patchS)

Mate - Merge two membranes.

Parameters:

membraneP - A membrane.

membraneQ - Another membrane.

patchS - A patch of membrane.

bud

public void bud(IXholon membraneP,
                IXholon membraneQ,
                IXholon patchS)

Bud - Split off an inner membrane.

Parameters:

membraneP - An initially inner membrane.

membraneQ - An initially outer membrane.

patchS - A patch of membrane.

drip

public void drip(IXholon membraneP,
                 IXholon patchS)

Drip - Split off zero inner membranes.

Parameters:

membraneP - A membrane.

patchS - A patch of membrane.

toString

public java.lang.String toString()

Overrides:

toString in class Xholon