org.primordion.xholon.tutorials.rcs
Class XhRcsTemp

java.lang.Object
  org.primordion.xholon.base.Xholon
      org.primordion.xholon.base.XholonWithPorts
          org.primordion.xholon.tutorials.rcs.XhRcsTemp

All Implemented Interfaces:

CeRcs1, IXholon

public class XhRcsTemp

extends XholonWithPorts

implements CeRcs1

Regulated Catalyzing System Glycogen - Phosphorylase system. Manually coded using symbolic states.

Since:

0.3 (Created on Jan 26, 2006)

Author:

Ken Webb

Field Summary

static int	MAX_SUB
static int	Product
static int	Regulation
java.lang.String	roleName
int	state
static int	Substrate
double	val

Fields inherited from class org.primordion.xholon.base.XholonWithPorts

port

Fields inherited from class org.primordion.xholon.base.Xholon

DEFAULT_LEVEL, interaction, interactionsEnabled

Fields inherited from interface org.primordion.xholon.tutorials.rcs.CeRcs1

EnzymeCE, Glucose_1_PhosphateCE, GlycogenCE, GlycogenPhosphorylaseCE, GlycogenPhosphorylaseSystemCE, includeCE, PhosphorylaseKinaseCE, PhosphorylasePhosphataseCE, PolysaccharideCE, RcsEnzymeCE, SmallMoleculeCE, XholonClassCE

Fields inherited from interface org.primordion.xholon.base.IXholon

DEFAULT_SIZE_MSG_Q, NINCLUDE_PSC, NINCLUDE_PSx, NINCLUDE_PxC, NINCLUDE_Pxx, NINCLUDE_xSC, NINCLUDE_xSx, NINCLUDE_xxC, NINCLUDE_xxx

Constructor Summary

XhRcsTemp()

Method Summary

void	act() Do some action during this time step.
void	decVal(double decAmount) Decrement an internal double value by a specified amount.
java.lang.String	getRoleName() Get name of the role played by this Xholon within a specific context.
double	getVal() Get the value of a "double" maintained by this xholon instance.
void	incVal(double incAmount) Increment an internal double value by a specified amount.
void	initialize() Initialize the tree node.
void	processReceivedMessage(Message msg) Process a received ROOM/UML2 message taken from the message queue.
void	setRoleName(java.lang.String roleName) Set name of the role played by this Xholon within a specific context.
void	setVal(double val) Set the value of a "double" maintained by this xholon instance.
java.lang.String	toString()

Methods inherited from class org.primordion.xholon.base.XholonWithPorts

configure, getMaxPorts, getPort, isActiveObject, isBound, isContainer, isPassiveObject, postConfigure, setMaxPorts, setPorts, terminate

Methods inherited from class org.primordion.xholon.base.Xholon

appendChild, appendChild, appendChild, cleanup, configure, createStructure, decVal, depth, draw, getChildNodes, getFirstChild, getFirstSibling, getId, getLastChild, getLastSibling, getName, getNeighbors, getNextId, getNextSibling, getNthChild, getNthSibling, getNumChildren, getNumSiblings, getParentNode, getPreviousSibling, getRootNode, getSiblings, getSizeMessageQ, getUid, getVal_boolean, getVal_byte, getVal_char, getVal_double, getVal_float, getVal_int, getVal_long, getVal_Object, getVal_short, getVal_String, getXhc, getXhcId, getXhcName, getXhType, handleNodeSelection, hasAncestor, hasChildNodes, hasChildOrSiblingNodes, hasNextSibling, hasParentNode, height, incVal, initStatics, inOrderPrint, insertAfter, insertBefore, insertFirstChild, isExternal, isInternal, isLeaf, isRootNode, performActivity, performActivity, performBooleanActivity, performBooleanActivity, performDoubleActivity, performGuard, performVoidActivity, postAct, postOrderPrint, postReconfigure, preAct, preConfigure, preOrderPrint, preReconfigure, print, println, processMessageQ, reconfigure, remove, removeChild, resetNextId, sendMessage, sendMessage, sendMessage, setAttributeVal, setFactory, setFirstChild, setId, setNextSibling, setParentChildLinks, setParentNode, setParentSiblingLinks, setSizeMessageQ, setUid, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVariableValue, setXhc, swapNode, treeSize, writeXml

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

Substrate

public static final int Substrate

See Also:

Constant Field Values

Product

public static final int Product

See Also:

Constant Field Values

Regulation

public static final int Regulation

See Also:

Constant Field Values

MAX_SUB

public static int MAX_SUB

state

public int state

roleName

public java.lang.String roleName

val

public double val

Constructor Detail

XhRcsTemp

public XhRcsTemp()

Method Detail

initialize

public void initialize()

Description copied from interface: IXholon

Initialize the tree node. Typically this is only used to re-initialize a node, such as when it is reused through the TreeNodeFactoryStatic.

Specified by:

initialize in interface IXholon

Overrides:

initialize in class XholonWithPorts

setRoleName

public void setRoleName(java.lang.String roleName)

Description copied from interface: IXholon

Set name of the role played by this Xholon within a specific context.

Specified by:

setRoleName in interface IXholon

Overrides:

setRoleName in class Xholon

getRoleName

public java.lang.String getRoleName()

Description copied from interface: IXholon

Get name of the role played by this Xholon within a specific context.

Specified by:

getRoleName in interface IXholon

Overrides:

getRoleName in class Xholon

getVal

public double getVal()

Description copied from interface: IXholon

Get the value of a "double" maintained by this xholon instance. If a class that implements this interface does not maintain such a value, it should return 0.0 This method can be used in place of getVal_double()

Specified by:

getVal in interface IXholon

Overrides:

getVal in class Xholon

setVal

public void setVal(double val)

Description copied from interface: IXholon

Set the value of a "double" maintained by this xholon instance.

Specified by:

setVal in interface IXholon

Overrides:

setVal in class Xholon

incVal

public void incVal(double incAmount)

Description copied from interface: IXholon

Increment an internal double value by a specified amount. This is a convenience method.

Specified by:

incVal in interface IXholon

Overrides:

incVal in class Xholon

decVal

public void decVal(double decAmount)

Description copied from interface: IXholon

Decrement an internal double value by a specified amount. This is a convenience method.

Specified by:

decVal in interface IXholon

Overrides:

decVal in class Xholon

act

public void act()

Description copied from interface: IXholon

Do some action during this time step. Typically all nodes in the tree will do their pre-actions (optional), then all will do their actions, and then all will do their post-actions (optional).

Specified by:

act in interface IXholon

Overrides:

act in class Xholon

processReceivedMessage

public void processReceivedMessage(Message msg)

Description copied from interface: IXholon

Process a received ROOM/UML2 message taken from the message queue. All sent messages are placed in queues before they are processed.

Specified by:

processReceivedMessage in interface IXholon

Overrides:

processReceivedMessage in class Xholon

toString

public java.lang.String toString()

Overrides:

toString in class Xholon