public class Xholon2CytojsNetwork extends AbstractXholon2Cytojs implements IXholon2GraphFormat
STRING_WRITERDEFAULT_SIZE_MSG_Q, DEFAULT_SIZE_SYSTEM_MSG_Q, GETNAME_DEFAULT, GETNAME_LOCALPART_ID, GETNAME_NOROLENAME, GETNAME_ROLENAME_OR_CLASSNAME, GETNAME_ROLENAMESEP_, GETNAME_SIZE_TEMPLATE, NINCLUDE_PSC, NINCLUDE_PSx, NINCLUDE_PxC, NINCLUDE_Pxx, NINCLUDE_xSC, NINCLUDE_xSx, NINCLUDE_xxC, NINCLUDE_xxx, XHOLON_ID_DEFAULT, XHOLON_ID_NULL| Constructor and Description |
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Xholon2CytojsNetwork()
The accumulating text for all Cytoscape edge elements.
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| Modifier and Type | Method and Description |
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void |
writeAll()
Write out all parts of the external-format file.
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void |
writeEdges(IXholon xhNode)
Write edges and edge attributes in the external format.
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void |
writeNode(IXholon xhNode)
Write an IXholon node or subtree as nodes in the external format.
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void |
writeNodeAttributes(IXholon xhNode)
Write node attributes in the external format.
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initializeadjustOptions, adjustOptionsNative, canAdjustOptions, getEfParamsAsJsonString, setEfParamsFromJsonStringact, actNr, appendChild, appendChild, appendChild, appendsOwnChildren, bindPorts, cleanup, compareTo, configure, configure, consoleLog, decVal, decVal, depth, doAction, equals, findFirstChildWithXhClass, findFirstChildWithXhClass, forwardMessage, forwardSyncMessage, getActionList, getAllPorts, getAnnotation, getApp, getAttributeNodeXh, getAttributeXh, getChildNodes, getClassNode, getClassNode, getFactory, getFirstChild, getFirstSibling, getId, getInteraction, getInteractionsEnabled, getIQueueImplName, getLastChild, getLastSibling, getLogger, getMsgQ, getName, getName, getNeighbors, getNextSibling, getNthChild, getNthSibling, getNumChildren, getNumLevels, getNumSiblings, getParentNode, getPort, getPort, getPreviousSibling, getRoleName, getRootNode, getSelfAndSiblings, getSelfAndSiblingsIndex, getService, getSiblings, getSystemMsgQ, getUid, getUri, getVal_boolean, getVal_byte, getVal_char, getVal_double, getVal_float, getVal_int, getVal_long, getVal_Object, getVal_short, getVal_String, getVal, getXhc, getXhcId, getXhcName, getXholon2Xml, getXhType, getXml2Xholon, getXPath, handleNodeSelection, handleNodeSelection, hasAncestor, hasAnnotation, hasAttributeXh, hasChildNodes, hasChildOrSiblingNodes, hasNextSibling, hasParentNode, hasSiblingNodes, height, incVal, incVal, initialize, initStatics, inOrderPrint, insertAfter, insertAfter, insertAfter, insertBefore, insertBefore, insertBefore, insertFirstChild, isActiveObject, isAttributeHandler, isBound, isContainer, isExternal, isInternal, isLeaf, isPassiveObject, isRootNode, isUniqueSibling, isUniqueSiblingRoleName, performActivity, performActivity, performBooleanActivity, performBooleanActivity, performDoubleActivity, performGuard, performVoidActivity, postAct, postConfigure, postOrderPrint, postReconfigure, preAct, preConfigure, preOrderPrint, preReconfigure, print, println, processMessageQ, processReceivedMessage, processReceivedSyncMessage, processSystemMessageQ, reconfigure, registerMessageForwardee, remove, removeAttributeNodeXh, removeAttributeXh, removeChild, replaceNode, searchForReferencingNodes, searchForReferencingNodesRecurse, sendMessage, sendMessage, sendMessage, sendSyncMessage, sendSyncMessage, sendSyncMessage, sendSystemMessage, sendSystemMessage, setActionList, setAnnotation, setApp, setAttributeNodeXh, setAttributeVal, setAttributeXh, setFirstChild, setId, setName, setNextSibling, setParentChildLinks, setParentNode, setParentSiblingLinks, setPort, setPort, setPorts, setRoleName, setUid, setUri, setVal_boolean, setVal_byte, setVal_char, setVal_double, setVal_float, setVal_int, setVal_long, setVal_Object, setVal_short, setVal_String, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setVal, setXhc, showAnnotation, swapNode, terminate, toString, toXml, toXmlAttribute, toXmlAttributes, toXmlText, treeSize, visitgetClass, hashCode, notify, notifyAll, wait, wait, waitadjustOptions, canAdjustOptions, getEfParamsAsJsonString, initialize, setEfParamsFromJsonStringpublic Xholon2CytojsNetwork()
public void writeAll()
IXholon2ExternalFormatwriteAll in interface IXholon2ExternalFormatpublic void writeNode(IXholon xhNode)
IXholon2GraphFormatwriteNode in interface IXholon2GraphFormatxhNode - An IXholon node.public void writeEdges(IXholon xhNode)
IXholon2GraphFormatwriteEdges in interface IXholon2GraphFormatxhNode - An IXholon node.public void writeNodeAttributes(IXholon xhNode)
IXholon2GraphFormatwriteNodeAttributes in interface IXholon2GraphFormatxhNode - An IXholon node.