Uses of Class
org.primordion.xholon.base.Xholon

Packages that use Xholon

ec.gp
org.primordion.cellontro.app
org.primordion.cellontro.app.sbml
org.primordion.cellontro.base
org.primordion.ctrnn.app
org.primordion.ctrnn.base
org.primordion.dynsys.app
org.primordion.ealontro.app
org.primordion.ealontro.ec.app.antforaging
org.primordion.ealontro.ec.app.cartcentering
org.primordion.memcomp.app
org.primordion.memcomp.base
org.primordion.user.app
org.primordion.user.app.Epo2
org.primordion.user.app.WolfSheepGrass
org.primordion.xholon.app
org.primordion.xholon.base
org.primordion.xholon.samples
org.primordion.xholon.tutorials
org.primordion.xholon.tutorials.rcs
org.primordion.xholon.tutorials.StupidModel
org.primordion.xholon.xmiapps
org.primordion.xholon.xmiappsArgoUML
org.primordion.xholon.xmiappsTc
org.primordion.xholon.xmiappsTcSysML

Uses of Xholon in ec.gp

Subclasses of Xholon in ec.gp

class

ec.gp.GPNode GPNode is a GPNodeParent which is the abstract superclass of all GP function nodes in trees.

Uses of Xholon in org.primordion.cellontro.app

Subclasses of Xholon in org.primordion.cellontro.app

class	AppCell Cell Model.
class	AppCellAutop Cell Model with Autopoiesis.
class	AppLife Life.
class	AppSbml SBML Application.
class	XhAbstractSbml SBML Application.
class	XhCell An instance of XhCell represents some biological entity, and exists as a node in a composite structure hierarchy tree.
class	XhCellAutop An instance of XhCellAutop represents some biological entity, and exists as a node in a composite structure hierarchy tree.
class	XhLife An instance of XhLife represents some biological entity, and exists as a node in a composite structure hierarchy tree.

Uses of Xholon in org.primordion.cellontro.app.sbml

Subclasses of Xholon in org.primordion.cellontro.app.sbml

class	XhBrusselator
class	XhCellModel
class	XhCircadianClock
class	XhDimericMWCstiff Example of very stiff biochemical model
class	XhGlycolysis This model has the same values as RRT model.
class	XhGlycolysis_Test
class	XhGlycolysisTESTXML This model has the same values as RRT model.
class	XhGlycolysisTESTXML2
class	XhGlyHunThouBilayer
class	XhGlyHunThouInhibit
class	XhGlyMillion
class	XhGlyTenThou
class	XhYeastGlyPritchardKel

Uses of Xholon in org.primordion.cellontro.base

Subclasses of Xholon in org.primordion.cellontro.base

class

BioXholonClass BioXholonClass is an application specific extension of XholonClass.

Uses of Xholon in org.primordion.ctrnn.app

Subclasses of Xholon in org.primordion.ctrnn.app

class	AppAdapSysLab Continuous-Time Recurrent Neural Network (CTRNN).
class	AppCtrnn Continuous-Time Recurrent Neural Network (CTRNN).
class	XhAdapSysLab Continuous-Time Recurrent Neural Network (CTRNN).

Uses of Xholon in org.primordion.ctrnn.base

Subclasses of Xholon in org.primordion.ctrnn.base

class

XhAbstractCtrnn Continuous-Time Recurrent Neural Network (CTRNN).

Uses of Xholon in org.primordion.dynsys.app

Subclasses of Xholon in org.primordion.dynsys.app

class	AppFibonacci Dynamical Systems - Fibonacci.
class	AppGravity1 Dynamical Systems - Gravity1.
class	AppInterest Dynamical Systems - Interest.
class	AppTrain Dynamical Systems - Train.
class	XhFibonacci Dynamical Systems - Fibonacci.
class	XhGravity1 Dynamical Systems - Gravity1.
class	XhInterest Dynamical Systems - Interest.
class	XhTrain Dynamical Systems - Train.

Uses of Xholon in org.primordion.ealontro.app

Subclasses of Xholon in org.primordion.ealontro.app

class	AppAntForaging Ant System with Genetic Programming.
class	AppAntTrail Ant Trail.
class	AppCartCentering Cart Centering System with Genetic Programming.
class	AppEcj ECJ Application superclass.
class	AppEcjAntTrail ECJ Ant Trail.
class	AppEcjTutorial4 ECJ Tutorial 4.
class	AppTutorial4 ECJ Tutorial 4.
class	XhAntForaging Ant Foraging System WITHOUT Genetic Programming.
class	XhAntTrail ECJ Ant Trail.
class	XhCartCentering Cart Centering System with Genetic Programming.
class	XhEcjAntTrail ECJ Ant.
class	XhEcjTutorial4 ECJ Tutorial 4.
class	XhTutorial4 ECJ Tutorial 4.

Uses of Xholon in org.primordion.ealontro.ec.app.antforaging

Subclasses of Xholon in org.primordion.ealontro.ec.app.antforaging

class	AppEcjAntForaging ECJ Ant Foraging.
class	DropPheromone
class	IfCarryingFood
class	IfFoodHere
class	MoveRandom
class	MoveToAdjacentFoodElse
class	MoveToAdjacentPheromoneElse
class	MoveToNest
class	PickUp
class	XhEcjAntForaging Ant Foraging System WITH Genetic Programming.

Uses of Xholon in org.primordion.ealontro.ec.app.cartcentering

Subclasses of Xholon in org.primordion.ealontro.ec.app.cartcentering

class	ABS
class	Add
class	AppEcjCartCentering ECJ Cart Centering.
class	Divide
class	GT
class	Multiply
class	Subtract
class	Velocity
class	XhEcjCartCentering ECJ Cart Centering.
class	XPosition

Uses of Xholon in org.primordion.memcomp.app

Subclasses of Xholon in org.primordion.memcomp.app

class	AppBraneCalc Brane Calculus.
class	AppBraneCalc1 Brane Calculus.
class	AppCoopPSys00ex0 Membrane Computing.
class	AppCoopSys02ex32_1 Membrane Computing.
class	AppCoopSys02ex343_1 Membrane Computing.
class	AppCoopSys02ex343_2 Membrane Computing.
class	AppFsm06ex1 Membrane Computing.
class	AppMemComp Membrane Computing.
class	AppSymAnti02ex41 Membrane Computing.
class	XhBraneCalc1 Membrane Computing.
class	XhCoopPSys00ex0 Membrane Computing.
class	XhCoopSys02ex32_1 Membrane Computing.
class	XhCoopSys02ex343_1 Membrane Computing.
class	XhCoopSys02ex343_2 Membrane Computing.
class	XhFsm06ex1 Membrane Computing.
class	XhSymAnti02ex41 Membrane Computing.

Uses of Xholon in org.primordion.memcomp.base

Subclasses of Xholon in org.primordion.memcomp.base

class	XhAbstractBraneCalc Brane Calculus.
class	XhAbstractMemComp Membrane Computing.

Uses of Xholon in org.primordion.user.app

Subclasses of Xholon in org.primordion.user.app

class	AppBrenda Brenda application - Xholon Java
class	AppTurtleExample1 TurtleExample1 application - Xholon Java
class	TurtleExample1
class	XhBrenda Brenda application - Xholon Java
class	XhTurtleExample1 TurtleExample1 application - Xholon Java

Uses of Xholon in org.primordion.user.app.Epo2

Subclasses of Xholon in org.primordion.user.app.Epo2

class	Address Extended Purchase Order example.
class	AppEpo2 Extended Purchase Order example.
class	Customer Extended Purchase Order example.
class	GlobalAddress Extended Purchase Order example.
class	Item Extended Purchase Order example.
class	PurchaseOrder Extended Purchase Order example.
class	USAddress Extended Purchase Order example.
class	XhEpo2 Extended Purchase Order example.

Uses of Xholon in org.primordion.user.app.WolfSheepGrass

Subclasses of Xholon in org.primordion.user.app.WolfSheepGrass

class	AppWolfSheepGrass Wolf Sheep Grass.
class	Grass Wolf Sheep Grass.
class	WolfSheep Wolf Sheep Grass.
class	XhWolfSheepGrass Wolf Sheep Grass.

Uses of Xholon in org.primordion.xholon.app

Subclasses of Xholon in org.primordion.xholon.app

class

Application This is an abstract class from which all Xholon applications should subclass.

Uses of Xholon in org.primordion.xholon.base

Subclasses of Xholon in org.primordion.xholon.base

class	AbstractGrid AbstractGrid is an abstract class that your detailed behavior class (ex: XhGameOfLife) should extend if it contains a grid superimposed on some portion of the tree.
class	Activity An activity is a type of behavior.
class	Attribute An Attribute is a passive object.
static class	Attribute.Attribute_boolean
static class	Attribute.Attribute_byte
static class	Attribute.Attribute_char
static class	Attribute.Attribute_double
static class	Attribute.Attribute_float
static class	Attribute.Attribute_int
static class	Attribute.Attribute_long
static class	Attribute.Attribute_Object
static class	Attribute.Attribute_short
static class	Attribute.Attribute_String
class	ContainmentHierarchy A ContainmentHierarchy represents a hierarchy (tree) of Xholon nodes contained within other Xholon nodes.
class	Control Control for a Xholon application.
class	GridEntity GridEntity is a general instantiable subclass of AbstractGrid.
class	InheritanceHierarchy An InheritanceHierarchy represents a hierarchy (tree) of XholonClass nodes that inherit from other XholonClass nodes.
class	Interaction UML 2.0 Interaction.
class	Message ROOM/UML2 message.
class	ObservableStateMachineEntity Observable StateMachineEntity.
class	ObservableXholonWithPorts Observable Xholon with ports.
class	Patch A patch is an agent in the turtle mechanism.
class	PatchOwner PatchOwner owns a collection of Logo Patches.
class	Port Port is one type of concrete "port" in a xholon application.
class	PortXhym A Port Xhym interacts with an individual port, and with its XhymAgent.
class	Queue This is a generic Queue data structure that can be used to store references to any type of data.
class	StateMachineEntity A state machine entity is any XholonClass that has to do with state machines.
class	StateMachineXhym A State Machine Xhym interacts with an individual xholon StateMachineEntity, and with its XhymAgent.
class	TreeNodeFactoryDynamic TreeNodeFactoryDynamic manages concrete instances of TreeNode subclasses.
class	TreeNodeFactoryStatic TreeNodeFactoryStatic manages concrete instances of TreeNode subclasses.
class	Turtle A turtle is an agent in the turtle mechanism.
class	XholonClass A XholonClass is a concrete subclass of Xholon.
class	XholonTime Handle time in a Xholon application.
class	XholonWithPorts A Xholon with ports, so it can set up lateral connections with peers.
class	XholonXhym A Xholon Xhym interacts with an individual xholon, and with its XhymAgent.
class	XhymAgent A Xhym Agent exchanges information between local Xhym entities and some process that lives outside of Xholon.

Uses of Xholon in org.primordion.xholon.samples

Subclasses of Xholon in org.primordion.xholon.samples

class	App09SpatialGames This is the detailed behavior of a sample Xholon application.
class	App1dSimple 1D Cellular Automaton.
class	AppCollisions Collisions.
class	AppCombo Combo Grid.
class	AppGameOfLife Conway's classic Game of Life.
class	AppGeneric A generic Xholon application, used for test purposes.
class	AppHex Hexagonal Grid.
class	AppPingPong Ping Pong.
class	AppTestFsmKW Test FSM.
class	AppTestFsmOrthog Test FSM.
class	AppTestFsmOrthogKW Test FSM.
class	Xh09SpatialGames This is the detailed behavior of a sample Xholon application.
class	Xh1dSimple 1D Cellular Automaton.
class	XhCollisions Collisions.
class	XhCombo Combo Grid.
class	XhGameOfLife Conway's classic Game of Life.
class	XhGeneric Used for test purposes.
class	XhHex Hexagonal Grid.
class	XhPingPong Ping Pong.
class	XhTestFsmKW Test FSM.
class	XhTestFsmOrthog Test FSM.
class	XhTestFsmOrthogKW Test FSM.

Uses of Xholon in org.primordion.xholon.tutorials

Subclasses of Xholon in org.primordion.xholon.tutorials

class	AppHelloWorld Hello World.
class	AppHelloWorld_NoXml Hello World.
class	AppHelloWorld_TestTime Test XholonTime using Hello World.
class	AppHelloWorld_Vrml Hello World with VRML.
class	XhHelloWorld Hello World.
class	XhHelloWorld_NoXml Hello World.
class	XhHelloWorld_str Hello World.
class	XhHelloWorld_TestTime Hello World.

Uses of Xholon in org.primordion.xholon.tutorials.rcs

Subclasses of Xholon in org.primordion.xholon.tutorials.rcs

class	AppRcs1 Regulated Catalyzing System - Glycogen Phosphorylase (GP) - Symbolic.
class	AppRcs2 Regulated Catalyzing System, version 2.
class	XhRcs1 Regulated Catalyzing System - Glycogen Phosphorylase (GP) - Symbolic.
class	XhRcs2 Regulated Catalyzing System - Glycogen Phosphorylase (GP) - Molecular Machine (MM).
class	XhRcsTemp Regulated Catalyzing System Glycogen - Phosphorylase system.

Uses of Xholon in org.primordion.xholon.tutorials.StupidModel

Subclasses of Xholon in org.primordion.xholon.tutorials.StupidModel

class	AppStupidModel1 StupidModel1 application - Xholon Java
class	AppStupidModel10 StupidModel10 application - Xholon Java
class	AppStupidModel11 StupidModel11 application - Xholon Java
class	AppStupidModel12 StupidModel12 application - Xholon Java
class	AppStupidModel13 StupidModel13 application - Xholon Java
class	AppStupidModel14 StupidModel14 application - Xholon Java
class	AppStupidModel15 StupidModel15 application - Xholon Java
class	AppStupidModel16 StupidModel16 application - Xholon Java
class	AppStupidModel16nl StupidModel16nl application - Xholon Java
class	AppStupidModel2 StupidModel2 application - Xholon Java
class	AppStupidModel3 StupidModel3 application - Xholon Java
class	AppStupidModel4 StupidModel4 application - Xholon Java
class	AppStupidModel5 StupidModel5 application - Xholon Java
class	AppStupidModel5tg StupidModel5tg application - Xholon Java
class	AppStupidModel6 StupidModel6 application - Xholon Java
class	AppStupidModel7 StupidModel7 application - Xholon Java
class	AppStupidModel8 StupidModel8 application - Xholon Java
class	AppStupidModel9 StupidModel9 application - Xholon Java
class	BugStupidModel1 StupidModel1 application - Xholon Java
class	BugStupidModel10 StupidModel10 application - Xholon Java
class	BugStupidModel11 StupidModel11 application - Xholon Java
class	BugStupidModel12 StupidModel12 application - Xholon Java
class	BugStupidModel13 StupidModel13 application - Xholon Java
class	BugStupidModel14 StupidModel14 application - Xholon Java
class	BugStupidModel15 StupidModel15 application - Xholon Java
class	BugStupidModel16 StupidModel16 application - Xholon Java
class	BugStupidModel16nl StupidModel16nl application - Xholon Java
class	BugStupidModel2 StupidModel2 application - Xholon Java
class	BugStupidModel3 StupidModel3 application - Xholon Java
class	BugStupidModel4 StupidModel4 application - Xholon Java
class	BugStupidModel5 StupidModel5 application - Xholon Java
class	BugStupidModel5tg StupidModel5tg application - Xholon Java
class	BugStupidModel6 StupidModel6 application - Xholon Java
class	BugStupidModel7 StupidModel7 application - Xholon Java
class	BugStupidModel8 StupidModel8 application - Xholon Java
class	BugStupidModel9 StupidModel9 application - Xholon Java
class	HabitatCellStupidModel10 StupidModel10 application - Xholon Java
class	HabitatCellStupidModel11 StupidModel11 application - Xholon Java
class	HabitatCellStupidModel12 StupidModel12 application - Xholon Java
class	HabitatCellStupidModel13 StupidModel13 application - Xholon Java
class	HabitatCellStupidModel14 StupidModel14 application - Xholon Java
class	HabitatCellStupidModel15 StupidModel15 application - Xholon Java
class	HabitatCellStupidModel16 StupidModel16 application - Xholon Java
class	HabitatCellStupidModel16nl StupidModel16nl application - Xholon Java
class	HabitatCellStupidModel3 StupidModel3 application - Xholon Java
class	HabitatCellStupidModel4 StupidModel4 application - Xholon Java
class	HabitatCellStupidModel5 StupidModel5 application - Xholon Java
class	HabitatCellStupidModel5tg StupidModel5tg application - Xholon Java
class	HabitatCellStupidModel6 StupidModel6 application - Xholon Java
class	HabitatCellStupidModel7 StupidModel7 application - Xholon Java
class	HabitatCellStupidModel8 StupidModel8 application - Xholon Java
class	HabitatCellStupidModel9 StupidModel9 application - Xholon Java
class	QueueStupidModel10 StupidModel10 queue - Xholon Java
class	QueueStupidModel11 StupidModel11 queue - Xholon Java
class	QueueStupidModel12 StupidModel12 queue - Xholon Java
class	QueueStupidModel13 StupidModel13 queue - Xholon Java
class	QueueStupidModel14 StupidModel14 queue - Xholon Java
class	QueueStupidModel15 StupidModel15 queue - Xholon Java
class	QueueStupidModel16 StupidModel16 queue - Xholon Java
class	QueueStupidModel16nl StupidModel16nl queue - Xholon Java
class	QueueStupidModel9 StupidModel9 queue - Xholon Java
class	XhStupidModel1 StupidModel1 application - Xholon Java
class	XhStupidModel10 StupidModel10 application - Xholon Java
class	XhStupidModel11 StupidModel11 application - Xholon Java
class	XhStupidModel12 StupidModel12 application - Xholon Java
class	XhStupidModel13 StupidModel13 application - Xholon Java
class	XhStupidModel14 StupidModel14 application - Xholon Java
class	XhStupidModel15 StupidModel15 application - Xholon Java
class	XhStupidModel16 StupidModel16 application - Xholon Java
class	XhStupidModel16nl StupidModel16nl application - Xholon Java
class	XhStupidModel2 StupidModel2 application - Xholon Java
class	XhStupidModel3 StupidModel3 application - Xholon Java
class	XhStupidModel4 StupidModel4 application - Xholon Java
class	XhStupidModel5 StupidModel5 application - Xholon Java
class	XhStupidModel5tg StupidModel5tg application - Xholon Java
class	XhStupidModel6 StupidModel6 application - Xholon Java
class	XhStupidModel7 StupidModel7 application - Xholon Java
class	XhStupidModel8 StupidModel8 application - Xholon Java
class	XhStupidModel9 StupidModel9 application - Xholon Java

Uses of Xholon in org.primordion.xholon.xmiapps

Subclasses of Xholon in org.primordion.xholon.xmiapps

class	App__XholonTemplate__ __XholonTemplate__ application - Xholon Java
class	AppElevator Elevator application - Xholon Java
class	AppElevator_ShowStates Elevator application - Xholon Java
class	AppFsm06ex1_Fsm Fsm06ex1_Fsm application - Xholon Java
class	AppHelloWorldTutorial_multiWorld HelloWorldTutorial_multiWorld application - Xholon Java
class	AppHelloWorldTutorial_plus HelloWorldTutorial_plus application - Xholon Java
class	AppHelloWorldTutorial_universe HelloWorldTutorial_universe application - Xholon Java
class	AppProvidedRequiredTest ProvidedRequiredTest application - Xholon Java
class	AppRcs_GP_FSM Rcs_GP_FSM application - Xholon Java
class	AppRcs_GP_FSM_Grid Rcs_GP_FSM_Grid application - Xholon Java
class	AppRcs_GP_MM Rcs_GP_MM application - Xholon Java
class	AppRcs_GP_MM_NoSymbols Rcs_GP_MM_NoSymbols application - Xholon Java
class	AppStopWatch StopWatch application - Xholon Java
class	AppStopWatch_Xhym StopWatch application - Xholon Java
class	AppTestFsm TestFsm application - Xholon Java
class	AppTestFsmForkJoin TestFsmForkJoin application - Xholon Java
class	AppTestFsmHistory TestFsmHistory application - Xholon Java
class	AppTestFsmJunction TestFsmJunction application - Xholon Java
class	AppTestFsmOrthogonal TestFsmOrthogonal application - Xholon Java
class	AppWatch Watch application - Inheritance Hierarchy
class	Xh__XholonTemplate__ __XholonTemplate__ application - Xholon Java
class	XhElevator Elevator application - Xholon Java
class	XhFsm06ex1_Fsm Fsm06ex1_Fsm application - Xholon Java
class	XhHelloWorldTutorial_multiWorld HelloWorldTutorial_multiWorld application - Xholon Java
class	XhHelloWorldTutorial_plus HelloWorldTutorial_plus application - Xholon Java
class	XhHelloWorldTutorial_universe HelloWorldTutorial_universe application - Xholon Java
class	XhProvidedRequiredTest ProvidedRequiredTest application - Xholon Java
class	XhRcs_GP_FSM Rcs_GP_FSM application - Xholon Java
class	XhRcs_GP_FSM_Grid Rcs_GP_FSM_Grid application - Xholon Java
class	XhRcs_GP_MM Rcs_GP_MM application - Xholon Java
class	XhRcs_GP_MM_NoSymbols Rcs_GP_MM_NoSymbols application - Xholon Java
class	XhStopWatch StopWatch application - Xholon Java
class	XhStopWatch_Xhym StopWatch application - Xholon Java
class	XhTestFsm TestFsm application - Xholon Java
class	XhTestFsmForkJoin TestFsmForkJoin application - Xholon Java
class	XhTestFsmHistory TestFsmHistory application - Xholon Java
class	XhTestFsmJunction TestFsmJunction application - Xholon Java
class	XhTestFsmOrthogonal TestFsmOrthogonal application - Xholon Java
class	XhWatch Watch application - Xh Java class

Uses of Xholon in org.primordion.xholon.xmiappsArgoUML

Subclasses of Xholon in org.primordion.xholon.xmiappsArgoUML

class	AppHelloWorldTutorial HelloWorldTutorial application - Inheritance Hierarchy
class	XhHelloWorldTutorial HelloWorldTutorial application - Xh Java class

Uses of Xholon in org.primordion.xholon.xmiappsTc

Subclasses of Xholon in org.primordion.xholon.xmiappsTc

class	AppStateMachineOnly StateMachineOnly application - Xholon Java
class	XhStateMachineOnly StateMachineOnly application - Xholon Java

Uses of Xholon in org.primordion.xholon.xmiappsTcSysML

Subclasses of Xholon in org.primordion.xholon.xmiappsTcSysML

class	AppHelloWorldTutorialSysML HelloWorldTutorialSysML application - Xholon Java
class	XhHelloWorldTutorialSysML HelloWorldTutorialSysML application - Xholon Java